Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_F13
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 179 2e-46
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 78 1e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 59 4e-10
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 56 4e-09
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 55 9e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 54 1e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 29 0.37
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 27 1.5
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 27 2.6
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 25 6.0
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 179 bits (436), Expect = 2e-46
Identities = 85/139 (61%), Positives = 102/139 (73%)
Frame = -1
Query: 572 LGPEIFFHPEFSNADFTVPLNEMVDEVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQ 393
L PEIFF+PE +++DF PL E+VD V+QS PIDVR+GLY NIVLSGGST+F++FG RLQ
Sbjct: 288 LAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQ 347
Query: 392 RDIKRAVDARLKLSTMLSEGRITPKPIDVQVVSHNMQRYAVWFGGSMLASTPEFYQVCHT 213
RD+KR VD R+ S MLS + +DV V+SH QR AVWFGGS+LA TPEF CHT
Sbjct: 348 RDLKRIVDERIHRSEMLSGAK--SGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHT 405
Query: 212 KQAYMEYGPSICRHNPVFG 156
K Y EYG SI R +FG
Sbjct: 406 KADYEEYGASIARRYQIFG 424
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 77.8 bits (183), Expect = 1e-15
Identities = 43/129 (33%), Positives = 68/129 (52%)
Frame = -1
Query: 566 PEIFFHPEFSNADFTVPLNEMVDEVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRD 387
PE F P + ++E I C +D+R+ LYGN+V+SGG+TM+ R+Q++
Sbjct: 258 PEALFQPSALGLE-NAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKE 316
Query: 386 IKRAVDARLKLSTMLSEGRITPKPIDVQVVSHNMQRYAVWFGGSMLASTPEFYQVCHTKQ 207
I+ + P + V++V+ ++Y+VW GGS+LAS F Q+ +KQ
Sbjct: 317 IQ----------------ALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 206 AYMEYGPSI 180
Y E GP I
Sbjct: 361 EYDESGPGI 369
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 59.3 bits (137), Expect = 4e-10
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Frame = -1
Query: 563 EIFFHPEFS---NADFTVP-----LNEMVDEVIQSCPIDVRRGLYGNIVLSGGSTMFRDF 408
EI F+P FS +A+ T P L+E+V + I +C ++R L NIV++GG+++
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 407 GRRLQRDIKRAVDARLKLSTMLSEGRITPKPIDVQVVSHNMQRYAVWFGGSMLASTPEFY 228
RLQ +++R + + RI + + N AVWFGGS+LAS F
Sbjct: 360 SERLQAEVQR----------LATGSRINVHTAETASATSN----AVWFGGSILASLDNFQ 405
Query: 227 QVCHTKQAYMEYG 189
+ +KQ Y E G
Sbjct: 406 HLWVSKQEYDEVG 418
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 56.0 bits (129), Expect = 4e-09
Identities = 37/122 (30%), Positives = 61/122 (50%)
Frame = -1
Query: 566 PEIFFHPEFSNADFTVPLNEMVDEVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRD 387
PE+ F+PE ++ + ++ ++ S ID+R LY NIVLSGGST+ R FG R +
Sbjct: 263 PEVLFNPEMMGSEASGLHIQLFKSILLS-DIDLRSTLYSNIVLSGGSTLLRGFGERFISE 321
Query: 386 IKRAVDARLKLSTMLSEGRITPKPIDVQVVSHNMQRYAVWFGGSMLASTPEFYQVCHTKQ 207
++ I+ K V++ + + + W GGS+LAS F ++ T +
Sbjct: 322 LR----------------AISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSE 365
Query: 206 AY 201
Y
Sbjct: 366 EY 367
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 54.8 bits (126), Expect = 9e-09
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Frame = -1
Query: 566 PEIFFHPEFSNADFTVPLNEMVDEVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRD 387
PE F P ++ L+E + + IQ+ +D+R+ LY IVLSGGS+M+ RL+++
Sbjct: 258 PECLFQPHLVGSE-QPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKE 316
Query: 386 IKRAVDARLKLSTMLSEGRITPKPIDVQVVSHNMQRYAVWFGGSMLAS-TPEFYQVCHTK 210
IK +L +L V++ +R+AV+ GG++LA + + +K
Sbjct: 317 IK-----QLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSK 371
Query: 209 QAYMEYG 189
+ EYG
Sbjct: 372 AEWEEYG 378
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 54.4 bits (125), Expect = 1e-08
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = -1
Query: 509 EMVDEVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQRDIKRAVD-ARLKLSTMLSEG 333
++ I C +D+R L N+++ GG+++ + F RLQ ++ + +RLK+ + G
Sbjct: 329 QLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGSRLKIH---ASG 385
Query: 332 RITPKPIDVQVVSHNMQRYAVWFGGSMLASTPEFYQVCHTKQAYMEYG 189
+ + YA W GGS+L+S F+Q+ ++Q Y E+G
Sbjct: 386 HVVERS------------YASWLGGSILSSLGTFHQLWISRQEYEEHG 421
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 29.5 bits (63), Expect = 0.37
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -1
Query: 566 PEIFFHP-EFSNADFTVPLNEMVDEVIQSCPIDVRRGLYGNIVLSGGSTMFRDFGRRLQR 390
PE+ F P + + +P E V + + P +++ L N+V GG+ F F +RL
Sbjct: 284 PELLFSPSDIEIREAGIP--EAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSS 341
Query: 389 DIKRAVDA 366
+++ A
Sbjct: 342 ELRSLAPA 349
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 530 DFTVPLNEMVDEVIQSCPIDVRRGLYGNIVLS 435
DF VPL++ + I CP++V +G + + + S
Sbjct: 396 DFPVPLDDSYMDFIFPCPLNVEKGSFEDTLKS 427
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 76 LQIHYFIRQSK*TSLVI*YW-KVVYVM 153
LQ HY I QS+ SL + +W ++VY++
Sbjct: 48 LQFHYLINQSEKISLKLIFWNELVYLL 74
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 6.0
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Frame = +3
Query: 144 LCHGTKNRVVSANTRTILHVCLFSMADL----VELWC*CKHTASEPHSI 278
L + KN VVS +L +FS AD+ WC PH I
Sbjct: 100 LLNSIKNGVVSERPNELLRFLIFSYADIKAYKYHYWCLFPSFKETPHWI 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,325
Number of Sequences: 5004
Number of extensions: 49640
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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