Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F12
         (744 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23DT7 Cluster: Putative uncharacterized protein; n=1; ...    36   1.4  
UniRef50_Q9FGR1 Cluster: Genomic DNA, chromosome 5, BAC clone:F6...    34   3.2  
UniRef50_UPI0000DB6C86 Cluster: PREDICTED: similar to proteasome...    33   9.8  

>UniRef50_Q23DT7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1680

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +2

Query: 62  LQYWPSQNYFSNKCLNIKKMLYILYSTNYLQAQQNS*CQITLVLQFE 202
           L+Y     YF N CLN +     L   NYLQ  QN    I+L  QF+
Sbjct: 849 LKYQIFMQYFENDCLNYQNFTLFLIDQNYLQQNQN---PISLQFQFQ 892


>UniRef50_Q9FGR1 Cluster: Genomic DNA, chromosome 5, BAC clone:F6N7;
           n=1; Arabidopsis thaliana|Rep: Genomic DNA, chromosome
           5, BAC clone:F6N7 - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 828

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -3

Query: 730 RGRRQXISRRTHPSTRICSHRCL*ENE*HSRTSSGAVSSPKPTRAVACKNVKS 572
           +G+   ++ + HP T +C+     ++  HSR +SG + +PK T  +A  N  S
Sbjct: 212 QGKSNIVAPQKHPLTNLCNELADEQSVEHSRVTSGGIIAPKKT-CIALSNESS 263


>UniRef50_UPI0000DB6C86 Cluster: PREDICTED: similar to proteasome
           (prosome, macropain) 26S subunit, non-ATPase, 2; n=1;
           Apis mellifera|Rep: PREDICTED: similar to proteasome
           (prosome, macropain) 26S subunit, non-ATPase, 2 - Apis
           mellifera
          Length = 871

 Score = 32.7 bits (71), Expect = 9.8
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = +3

Query: 471 QLDICNPV*IQK-YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPDDVLEC 647
           +LDI  P      YKT  +  T     +   R     TF+      GFG D   D+  EC
Sbjct: 306 ELDILEPKHPDDIYKTWLETNTLRRAEHDSARANLAATFVSGFVHAGFGQDKLMDNTSEC 365

Query: 648 YSFSYK 665
           + +  K
Sbjct: 366 WVYKNK 371


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,503,654
Number of Sequences: 1657284
Number of extensions: 12640767
Number of successful extensions: 26829
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26816
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)