Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F12
         (744 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.0  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   6.0  

>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 580 HFYKRRLASASVMIPRQTTFSNVTRFLINTDENKCVCWGECGEILXVA 723
           +F  + LA + + I    T ++V  F+I  + +    +  CG ++ VA
Sbjct: 490 YFISKTLAESPIFIIIPVTLTSVCYFMIGLNSHGFRFYIACGIMILVA 537


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 453 YLYSSGQLDICNPV*IQKYKTVKDDTTF 536
           +LY + +  +   V I+  KT  D+TTF
Sbjct: 425 WLYLNNEGSLVYNVQIENLKTTPDNTTF 452


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 108 ISRKCYIYYIVQIT 149
           I+  C +YYI+QIT
Sbjct: 164 INDMCSLYYILQIT 177


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,362
Number of Sequences: 336
Number of extensions: 3722
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)