Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F08
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   5.9  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   7.8  

>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 308 RHDMYVFNFFIKTLTTTNSIKYL 240
           +HD  +F  F+K +T+ N  +YL
Sbjct: 78  KHDTMIFTLFVKYITSLNHPEYL 100


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
 Frame = -1

Query: 606 VYSYACSKKRLFQYYKHTLQFYLYV*M-----XTVNSF---LCRLVRVR-LLSWKSKK-V 457
           VY      KR++ ++ H+ + +LY  +      T+ SF   LCR V    LLS+K ++ +
Sbjct: 86  VYWIRVFLKRIYTFFVHSARVFLYHFLNEEKEFTLASFFWGLCRFVFFPVLLSYKRREML 145

Query: 456 PPTGSYVRP 430
           PP  S  RP
Sbjct: 146 PPQPSVRRP 154


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -2

Query: 575 YFNITNIHSNFIYMYR*XRSIRSFVVWFVYVFCRGSQKKYHLPVVTSAPL 426
           + +IT I+ +  Y YR    +    +WF+Y F   S   ++L + +++ L
Sbjct: 169 FSSITKINFSRGYKYR--IQLTDGKIWFLYAFPTSSSSTFNLTLASNSQL 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,116
Number of Sequences: 5004
Number of extensions: 40646
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)