Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_F08
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41991-3|AAA83343.2| 350|Caenorhabditis elegans Seven tm recept... 29 4.2
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 27 9.7
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 27 9.7
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 27 9.7
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 27 9.7
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 27 9.7
AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ... 27 9.7
>U41991-3|AAA83343.2| 350|Caenorhabditis elegans Seven tm receptor
protein 220 protein.
Length = 350
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 623 IYDLTRYIHMHAVKSDYFNITNIHSNFIYMYR*XRSIRSFVVW-FVYVFCRGSQKKYHLP 447
+YDL +Y+H+ S +F I + + F+ +S R V+ ++ VF + Y L
Sbjct: 4 VYDLPQYLHIFTKCSLFFAI--LFNTFLVYLILTKSPRQLGVYKYLMVFISIFEILYSLL 61
Query: 446 VVTSAPLKYRWSALV 402
VT P+ Y + + V
Sbjct: 62 EVTLTPIHYSYRSSV 76
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 388 KEKNGTRADHLYFSGADVTTGRWYFF*LPRQKTYTNQTTKERIDRXHLY 534
++ G DH D+ TGRW +P ++ T +TT + H Y
Sbjct: 1976 EDDGGAPIDHYEIEKMDLATGRW----VPCGRSETTKTTVPNLQPGHEY 2020
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 388 KEKNGTRADHLYFSGADVTTGRWYFF*LPRQKTYTNQTTKERIDRXHLY 534
++ G DH D+ TGRW +P ++ T +TT + H Y
Sbjct: 2505 EDDGGAPIDHYEIEKMDLATGRW----VPCGRSETTKTTVPNLQPGHEY 2549
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 388 KEKNGTRADHLYFSGADVTTGRWYFF*LPRQKTYTNQTTKERIDRXHLY 534
++ G DH D+ TGRW +P ++ T +TT + H Y
Sbjct: 2186 EDDGGAPIDHYEIEKMDLATGRW----VPCGRSETTKTTVPNLQPGHEY 2230
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 388 KEKNGTRADHLYFSGADVTTGRWYFF*LPRQKTYTNQTTKERIDRXHLY 534
++ G DH D+ TGRW +P ++ T +TT + H Y
Sbjct: 1976 EDDGGAPIDHYEIEKMDLATGRW----VPCGRSETTKTTVPNLQPGHEY 2020
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 388 KEKNGTRADHLYFSGADVTTGRWYFF*LPRQKTYTNQTTKERIDRXHLY 534
++ G DH D+ TGRW +P ++ T +TT + H Y
Sbjct: 2505 EDDGGAPIDHYEIEKMDLATGRW----VPCGRSETTKTTVPNLQPGHEY 2549
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 388 KEKNGTRADHLYFSGADVTTGRWYFF*LPRQKTYTNQTTKERIDRXHLY 534
++ G DH D+ TGRW +P ++ T +TT + H Y
Sbjct: 2186 EDDGGAPIDHYEIEKMDLATGRW----VPCGRSETTKTTVPNLQPGHEY 2230
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 388 KEKNGTRADHLYFSGADVTTGRWYFF*LPRQKTYTNQTTKERIDRXHLY 534
++ G DH D+ TGRW +P ++ T +TT + H Y
Sbjct: 1395 EDDGGAPIDHYEIEKMDLATGRW----VPCGRSETTKTTVPNLQPGHEY 1439
>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
protein Y59E9AL.4 protein.
Length = 1100
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 332 RLITTRHRLRQTLDKNSKIKRKMER 406
RL RHR R+T D K+ R +ER
Sbjct: 709 RLSAQRHRTRRTRDIRQKVARTLER 733
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,847,844
Number of Sequences: 27780
Number of extensions: 223058
Number of successful extensions: 396
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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