Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F06
         (634 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q81LR1 Cluster: DNA internalization-related competence ...    33   5.7  
UniRef50_Q8IAP1 Cluster: Putative uncharacterized protein MAL8P1...    33   7.5  

>UniRef50_Q81LR1 Cluster: DNA internalization-related competence
           protein ComEC/Rec2; n=11; Bacillus cereus group|Rep: DNA
           internalization-related competence protein ComEC/Rec2 -
           Bacillus anthracis
          Length = 772

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = -2

Query: 543 VISRVLLLLNVARTHCIPIVSYHFIAYARYIDKMNYTHI*KCKSVVSLNGDIIFIVCTCL 364
           VI   + +  +++    PI+ YHF  Y+ Y   +N  ++    S++ L   II ++C  +
Sbjct: 351 VIRNSIYISLISQLVSTPILLYHFGYYSPYSIFLNILYV-PFLSLIVLPCSIIILICLPI 409

Query: 363 VPFL 352
           +PFL
Sbjct: 410 IPFL 413


>UniRef50_Q8IAP1 Cluster: Putative uncharacterized protein MAL8P1.139;
            n=3; root|Rep: Putative uncharacterized protein
            MAL8P1.139 - Plasmodium falciparum (isolate 3D7)
          Length = 5910

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 47   FVQHIKRITXTNHHNNK*RFDIETLYTKMDMTQYDDSKMNEL--MTDTKN*INVVQGTT 217
            ++Q++  +T +N++NN    +  T+Y K    Q DD + NEL  + DT   I  VQ  T
Sbjct: 5280 YIQYVNNLTISNNNNNNNDSNNNTVYDK--KKQKDDQEENELQKINDTNTNIYEVQDKT 5336


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 532,429,900
Number of Sequences: 1657284
Number of extensions: 9836476
Number of successful extensions: 19784
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19776
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)