Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F06
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80440-3|AAK21470.2|  380|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z81096-1|CAB03161.3|  478|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AC006677-9|AAF39947.1|  344|Caenorhabditis elegans Serpentine re...    27   8.4  

>U80440-3|AAK21470.2|  380|Caenorhabditis elegans Hypothetical
           protein T21E12.2 protein.
          Length = 380

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = +2

Query: 197 NVVQGTTPLLLNRISLLIHFGSHSVLFDLSTLLTNRLIRVHIGLSLHFYNII 352
           N+   TT  LL+  S+L+ F  H   F L  LL    IR H+  SLHF + I
Sbjct: 321 NLATTTTTFLLH--SMLLLFLYH--FFFLLALLLQTNIRTHLPFSLHFLHSI 368


>Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 582 RNIGFGNPLG*SDVISRVLLLLNVARTHCIPIVSYHFIAYARY 454
           RNI   NP G ++V+     L  +  T  I  + Y F+ YA +
Sbjct: 347 RNISISNPKGFNEVVQEGHALAFIVYTEAIAQMPYPFLWYALF 389


>Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 582 RNIGFGNPLG*SDVISRVLLLLNVARTHCIPIVSYHFIAYARY 454
           RNI   NP G ++V+     L  +  T  I  + Y F+ YA +
Sbjct: 347 RNISISNPKGFNEVVQEGHALAFIVYTEAIAQMPYPFLWYALF 389


>Z81096-1|CAB03161.3|  478|Caenorhabditis elegans Hypothetical
           protein K03H4.1 protein.
          Length = 478

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 245 LIHFGSHSVLFDLSTLLTNRLIRVHIGLSLHFYNIIKNGTRHVQTIKIIS 394
           LI   SH   F  ST L  ++ R+   LSL         ++ +Q I++IS
Sbjct: 115 LIEISSHRFYFSRSTSLAQQIRRILANLSLRSSLDKSEESQRIQIIRLIS 164


>AC006677-9|AAF39947.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein56 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 522 LLNVARTHCIPIVSYHF-IAYARYIDKMNYTHI*KCKSVVSLNGDIIFIVCTCLVPFL 352
           L NV+    IP ++  F +AY  Y DKMNY +     + + +  +   ++CTC   F+
Sbjct: 250 LKNVSIQISIPWIAIAFPVAYTMYADKMNYYNQAYNNNAMLIMAN-HGLLCTCCTLFI 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,920,465
Number of Sequences: 27780
Number of extensions: 254414
Number of successful extensions: 511
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)