Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F06
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   0.35 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.9  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 346 HNQKRYETRTDNKNN 390
           HNQ R+ +++DN+NN
Sbjct: 429 HNQARHSSKSDNQNN 443


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 236 ISLLIHFGSHSVLFDLSTLLTNR 304
           +SLLI+F  ++ + D+S L+  R
Sbjct: 503 VSLLINFSKNNTIVDISKLVNKR 525


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 104 FDIETLYTKMDMTQYDDSKMNELMTDTKN*INVV 205
           +D++T   K+    YD  K++    D K+  NVV
Sbjct: 162 YDVQTCVLKLGSWTYDGFKVDLRHMDEKSGSNVV 195


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 347 IIKNGTRHVQTIKIISPFKETTDLH 421
           I +NG R       I+PF+  ++LH
Sbjct: 256 ISRNGVRLSSARAFITPFENRSNLH 280


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = +2

Query: 92  NK*RFDIETLYTKMDMTQYDDSKMNELMTDTKN*INVVQGTTPLLLNRISLLIHFGSHSV 271
           N  R + ++ Y +M+  Q      N+L+T  K+   +V       L + S+L+H  +  +
Sbjct: 386 NNLRGETQSNYREMEKRQ--SVPANDLLTTEKDNNEIVTAQFLNQLKKSSVLVHTKNGRL 443

Query: 272 LFDLS 286
            + +S
Sbjct: 444 KYQIS 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,580
Number of Sequences: 438
Number of extensions: 3349
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)