Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F05
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    30   0.36 
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    30   0.36 
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    29   0.63 
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    28   1.5  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   2.5  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   4.4  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   7.8  

>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
 Frame = -3

Query: 637 EVDKQFA--ALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANKADIIS 464
           E++ + A  +  ++    C++C   F       KH  ++  H   + E +   ++  +  
Sbjct: 192 EIEAELARRSSQRLSPRDCLFCAASFSSFDTCKKHMKAS--HSLYIPEREYLVDEPSLF- 248

Query: 463 VYMKGNYILHSEGASFTCVNCNGVFXSIRSLLMHLVHAEH 344
                +Y+       FTC+ CN  F S+ ++  H+    H
Sbjct: 249 -----DYLAEKISIGFTCLTCNREFKSLEAVRAHMQQKGH 283


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 30/125 (24%), Positives = 53/125 (42%)
 Frame = -3

Query: 607 KIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANKADIISVYMKGNYILHSE 428
           KI+ L+C++CN +   NR+       + +H        LN   AD I    +    + +E
Sbjct: 91  KIKSLQCLFCNNEGLLNRQ---EWFEHSFHVHG-----LNIGLADNIVYINRLLEKIKNE 142

Query: 427 GASFTCVNCNGVFXSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKHNINMLAKNKYVYY 248
             SF C+ C+    + + L  H+ +  HF   P +     +Y+     IN  +  K +  
Sbjct: 143 LESFRCLCCHVPCKNKKLLREHMNNKRHFRLDPKSSEYDEFYI-----INYASVTKSITI 197

Query: 247 SFGRF 233
           S  +F
Sbjct: 198 SHSQF 202


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 21/67 (31%), Positives = 26/67 (38%)
 Frame = -3

Query: 571 DFRDNREAVKHALSNVYHQSAVAETKLNANKADIISVYMKGNYILHSEGASFTCVNCNGV 392
           D   N E  K  + N Y       TKL   KA + S   +GN +L S        N NG 
Sbjct: 595 DVSKNIERKKETVHNTYRNLMSNRTKLEEMKASLSSSRSRGN-VLESLQRLHESDNLNGF 653

Query: 391 FXSIRSL 371
           F  +  L
Sbjct: 654 FGRLGDL 660


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 342 KCSACTKCIKSDRIEXNTP 398
           KC+ C +CI+SD +  N P
Sbjct: 179 KCNLCYECIESDELRANCP 197


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 292 LIRDNNGRCTPPAVCKQSARRALNASKATESNXIRHCN 405
           +IR+NN +  P  V K  A + L A +  +   I HC+
Sbjct: 607 VIRENNYKGLPLIVVKSFALQGLQALRLLQGQNIIHCD 644


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 595 DLRFYSVPQIVCRLRCSRPDGEVWLRSPCV 684
           + +   +P +      S P GEVW+R P V
Sbjct: 471 EFKLVDIPDLGYYTDSSPPRGEVWIRGPAV 500


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 365 HQKRPNRXEYAIAIDARKGRSFAVQDVISLH 457
           H K P      + +++R GR   VQD +  H
Sbjct: 486 HHKNPKCRAKKLVVESRNGRREYVQDAVRRH 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,203
Number of Sequences: 5004
Number of extensions: 50513
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)