Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F05
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0124 - 938612-940098,940643-940748                               31   0.65 
08_02_0858 + 21943679-21943716,21944009-21944177,21945996-21946025     29   3.5  
10_01_0208 - 2228234-2228254,2228494-2228709,2228796-2228946,222...    29   4.6  
04_04_1281 - 32370253-32370519,32371046-32371190,32371546-32371778     29   4.6  
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342...    28   6.0  

>07_01_0124 - 938612-940098,940643-940748
          Length = 530

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 283 INMLAKNKYV-YYSFGRFKCGVCDADIEEGEXAKRHVLSPK 164
           +N+L K  Y  YY+  RF+C V +AD  +      HV+  K
Sbjct: 90  LNILRKEMYRGYYTLDRFRCHVHEADHTKDHEVSNHVIPSK 130


>08_02_0858 + 21943679-21943716,21944009-21944177,21945996-21946025
          Length = 78

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 595 LKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANKADIISVYMKGN 446
           ++C  C+  F   RE V H  SN      +A+ K  A KA +  +  KGN
Sbjct: 27  IECPKCHGVFNTRREFVNHKCSNT-RLFMLAQAKKAAKKAVLKQIRNKGN 75


>10_01_0208 -
           2228234-2228254,2228494-2228709,2228796-2228946,
           2229031-2229268,2229394-2229604,2229765-2229943,
           2230041-2230151,2230445-2231240
          Length = 640

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/80 (27%), Positives = 39/80 (48%)
 Frame = +2

Query: 434 VQDVISLHVNAYYIRFVRVQLRLRDGALVVHIRKRMFDGLTVIPKIEVAINAFQIFDFIQ 613
           V  V+   +  YY R+ R + R +D   +   R R F G  +I ++E  I+ F +F+F +
Sbjct: 281 VAAVVLCLIVCYYCRWSR-RFR-KDRVRLREKRSRRFRGDELICEMEGEISEFSVFEFRE 338

Query: 614 CRKLFVDFVVHGQTEKFGYG 673
             K   +F    +  + G+G
Sbjct: 339 VIKATDNFSEENKLGEGGFG 358


>04_04_1281 - 32370253-32370519,32371046-32371190,32371546-32371778
          Length = 214

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 99  LASHSTADASSLMYVAPIFSLCFGDRTC 182
           LASH+T D  +  Y+ P +   FG + C
Sbjct: 158 LASHNTGDPLTCSYLVPSYGTAFGIKGC 185


>09_04_0489 -
           18031187-18031579,18032033-18034030,18034102-18034234,
           18035360-18036108
          Length = 1090

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 592 KCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLN 488
           +C  CN  F+D    V+H LS  +HQ      K+N
Sbjct: 342 ECQKCNLTFQDQSAYVQHQLS--FHQRKAKRRKVN 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,582,933
Number of Sequences: 37544
Number of extensions: 335692
Number of successful extensions: 853
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)