Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_F05
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical pr... 35 0.047
Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z92973-3|CAB07491.1| 244|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z36752-3|CAA85325.1| 422|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 30 1.8
Z77662-7|CAB01197.1| 349|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 30 1.8
U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical pr... 29 2.4
AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical ... 29 2.4
Z83227-4|CAB05729.2| 336|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z79694-8|CAB01965.1| 872|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z72506-9|CAA96622.1| 872|Caenorhabditis elegans Hypothetical pr... 29 3.1
X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin prot... 29 3.1
U63996-1|AAC47234.1| 336|Caenorhabditis elegans zinc finger pro... 29 3.1
Z92786-1|CAB07203.1| 250|Caenorhabditis elegans Hypothetical pr... 28 5.4
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical... 28 5.4
Z82090-4|CAB05008.2| 543|Caenorhabditis elegans Hypothetical pr... 28 7.2
U41027-2|AAV28335.1| 447|Caenorhabditis elegans Hypothetical pr... 28 7.2
U41027-1|AAV28336.1| 480|Caenorhabditis elegans Hypothetical pr... 28 7.2
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 28 7.2
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 28 7.2
AL031635-6|CAA21044.1| 761|Caenorhabditis elegans Hypothetical ... 28 7.2
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 27 9.5
U61955-7|AAV58862.1| 456|Caenorhabditis elegans Hypothetical pr... 27 9.5
U61955-6|AAC24408.2| 505|Caenorhabditis elegans Hypothetical pr... 27 9.5
U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 27 9.5
>Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical
protein F46B6.7 protein.
Length = 614
Score = 35.1 bits (77), Expect = 0.047
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Frame = -3
Query: 595 LKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANKADIISVYMKGNYILHSEGASF 416
L+C++C ++ R NR + H L ++H LN D ++ YI H +
Sbjct: 305 LQCIFCRYNARGNRSKIIHHLYMIHH--------LNLGSPD--NLVFVTEYIEHLKEKLH 354
Query: 415 --TCVNCNGVFXSIRSLLMHLVHAEHFAYRPPAECTFRYYL 299
C+ C +F +L+ H+ H P ++Y+
Sbjct: 355 RNECIYCEKIFPDRNTLMDHMRKRNHREVNPKNHYYDKFYI 395
>Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical
protein F25D7.3 protein.
Length = 817
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Frame = -3
Query: 448 NYILHSEGAS--FTCVNCNGVFXSIRSLLMHLVHAEHFAYRP-PAECTFRYYLELKHNIN 278
NY+ E + C +CN F + +L +H+ H RP E + + +L H
Sbjct: 496 NYVQQQENGKTRYACKDCNKTFGQLSNLKVHV--RTHTGERPFKCEICTKEFTQLAH--- 550
Query: 277 MLAKNKYVYYSFGRFKCGVCDADIEEGEXAKRHV 176
L K+ V+ +C +CD K H+
Sbjct: 551 -LQKHHLVHTGERPHRCDICDKRFSSTSNLKTHL 583
>Z92973-3|CAB07491.1| 244|Caenorhabditis elegans Hypothetical
protein Y6G8.3 protein.
Length = 244
Score = 31.5 bits (68), Expect = 0.58
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Frame = -3
Query: 646 VNNEVDKQFAALNKIEDLK----CVYCNFDFRDNREAVKHA--LSNVYHQSAVAETKLNA 485
+N + K+++ L + DL+ C C F+ N +H L H + + KLNA
Sbjct: 5 LNPVIRKEYSELKR-PDLRGKFICASCGQHFQHNASLNRHRRLLHGNEHTCMMCDRKLNA 63
Query: 484 NKADIISVYMKGNYILHSEGASFTCVNCNGVFXSIRSLLMH 362
+ I +M+ + L FTC CN F S R L H
Sbjct: 64 KET--IRDHMRNEHNLFQV---FTCGCCNWSFSSKRQLSEH 99
>Z36752-3|CAA85325.1| 422|Caenorhabditis elegans Hypothetical
protein F35H8.3 protein.
Length = 422
Score = 30.7 bits (66), Expect = 1.0
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Frame = -3
Query: 463 VYMKGNYILHSEGASFTCVNCNGVFXSIRSLLMHLVHAEHFAYRPPAECTF--RYYLELK 290
VY + +H + F C NC F + S+ HL +H +P C + R + +L+
Sbjct: 185 VYQRHIQEVHGDARPFRCFNCGMRFANKTSMTHHL--KDHSLLKPMFSCDYCPRIFSKLE 242
Query: 289 HNINMLAKNKYVYYSFGRFKCGVCDADIEEGEXAKRHVLSPKH 161
+K ++ F R C C E A RH S H
Sbjct: 243 ------SKTRHHKMHFTRSTCQTC-MRFFTTEDALRHHQSTAH 278
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Frame = -3
Query: 424 ASFTCVNCNGVFXSIRSLLMH--LVHAE-HFA----YRPPAECTFRYYLELKHNINMLAK 266
A +C +C F S RSL H +H H ++ P T + ++E +HNI ++
Sbjct: 307 ARLSCKSCGKFFYSERSLSKHHRQIHMSGHVCVLCNHQMPKTVTVQEHMEKEHNIRLVFN 366
Query: 265 NKYVYYSFGRFKC 227
+ +SF +C
Sbjct: 367 CRCCNWSFATRRC 379
>Z77662-7|CAB01197.1| 349|Caenorhabditis elegans Hypothetical
protein F47B8.7 protein.
Length = 349
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 60 NLIFYLLTSTXICLASHSTA-DASSLMYVAPIFS 158
NLIF +LTS +C +S T+ D + L +VA F+
Sbjct: 160 NLIFQVLTSVSLCFSSFPTSKDITELQFVANKFT 193
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Frame = -3
Query: 424 ASFTCVNCNGVFXSIRSLLMH--LVHAE-HFA----YRPPAECTFRYYLELKHNINMLAK 266
A +C +C F S RSL H +H H ++ P T + ++E +HNI ++
Sbjct: 307 ARLSCKSCGKFFYSERSLSKHHRQIHMSGHVCVLCNHQMPKTVTVQEHMEKEHNIRLVFN 366
Query: 265 NKYVYYSFGRFKC 227
+ +SF +C
Sbjct: 367 CRCCNWSFATRRC 379
>U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical
protein C52E12.6 protein.
Length = 346
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/71 (19%), Positives = 32/71 (45%)
Frame = -3
Query: 658 LRLAVNNEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANK 479
++ N E+++ +K ++L C CN FR +KH + + + L ++K
Sbjct: 212 IKFRFNRELNEHVRLQHKSKELSCCVCNMVFRQLSAKIKH--EKTHEKGSPISNILKSSK 269
Query: 478 ADIISVYMKGN 446
++ ++ N
Sbjct: 270 CSAVNRQVEKN 280
>AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical
protein F12E12.5 protein.
Length = 330
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = -3
Query: 592 KCVYCNFDFRDNREAVKHALSNVYHQSAVAET-KLNANKADIISVYMKGNYILHSEGASF 416
+C C F + +H +++ +S T + + D + ++ N++ E + F
Sbjct: 64 RCENCEKQFTNKPNLKRHQITHSGSKSKKCSTCQRTFFREDQLQRHLH-NHL--KERSHF 120
Query: 415 TC--VNCNGVFXSIRSLLMHLVHAEHFAYRPPAEC 317
C +NC+ F + HLV+ HF+Y A C
Sbjct: 121 DCPVLNCSMQFVFYEGVENHLVNHHHFSYSESAPC 155
>Z83227-4|CAB05729.2| 336|Caenorhabditis elegans Hypothetical
protein F45B8.4 protein.
Length = 336
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = -3
Query: 439 LHSEGASFTCVNCNGVFXSIRSLLMH-LVHAEHFAYRPPAECTFRYYLELKHNINMLAKN 263
+H F C C F +L H L+H++ Y P C R+ H + + K+
Sbjct: 147 VHVSDKQFECKQCGKTFKRSSTLSTHLLIHSDTRPY-PCEYCGKRF-----HQKSDMKKH 200
Query: 262 KYVYYSFGRFKCGVC 218
Y++ KC VC
Sbjct: 201 TYIHTGEKPHKCTVC 215
>Z79694-8|CAB01965.1| 872|Caenorhabditis elegans Hypothetical
protein F07A5.7 protein.
Length = 872
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 512 RRRGDEAEREQSGYNKRLHEGKLHLAQRRSVL 417
RRR ++AERE+S +LH+ +L L R+ L
Sbjct: 243 RRRLEDAERERSQLQSQLHQVQLELDSVRTAL 274
>Z72506-9|CAA96622.1| 872|Caenorhabditis elegans Hypothetical
protein F07A5.7 protein.
Length = 872
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 512 RRRGDEAEREQSGYNKRLHEGKLHLAQRRSVL 417
RRR ++AERE+S +LH+ +L L R+ L
Sbjct: 243 RRRLEDAERERSQLQSQLHQVQLELDSVRTAL 274
>X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin
protein.
Length = 882
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 512 RRRGDEAEREQSGYNKRLHEGKLHLAQRRSVL 417
RRR ++AERE+S +LH+ +L L R+ L
Sbjct: 259 RRRLEDAERERSQLQSQLHQVQLELDSVRTAL 290
>U63996-1|AAC47234.1| 336|Caenorhabditis elegans zinc finger
protein PAG-3 protein.
Length = 336
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = -3
Query: 439 LHSEGASFTCVNCNGVFXSIRSLLMH-LVHAEHFAYRPPAECTFRYYLELKHNINMLAKN 263
+H F C C F +L H L+H++ Y P C R+ H + + K+
Sbjct: 147 VHVSDKQFECKQCGKTFKRSSTLSTHLLIHSDTRPY-PCEYCGKRF-----HQKSDMKKH 200
Query: 262 KYVYYSFGRFKCGVC 218
Y++ KC VC
Sbjct: 201 TYIHTGEKPHKCTVC 215
>Z92786-1|CAB07203.1| 250|Caenorhabditis elegans Hypothetical
protein F47H4.1 protein.
Length = 250
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = -3
Query: 589 CVYCNFDFRDNREAVKHA--LSNVYHQSAVAETKLNANKADIISVYMKGNYILHSEGASF 416
C C+ +F+ + +H + + H + E LN + + I +M+ H+ F
Sbjct: 27 CSSCSQNFQHSASLNRHRQLMHSNEHTCMMCERALN--QKETIREHMRNE---HNLAQVF 81
Query: 415 TCVNCNGVFXSIRSLLMH 362
TC CN F S R L H
Sbjct: 82 TCGCCNWTFASKRQLTEH 99
>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
protein Y105C5B.2 protein.
Length = 1044
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = -2
Query: 434 QRRSVLYVRQLQWRIXFDSVAFD----AFSA-RRALCLQTAGGVHLPLLSRIKTQH*YAG 270
QR+ L ++Q+ WR+ DS++FD + SA RR + TA + + S +H
Sbjct: 431 QRKEHL-IQQMPWRVPLDSISFDDNGGSLSASRRVSTISTARASYSSIFSGNVAEHAIVN 489
Query: 269 EKQI 258
++++
Sbjct: 490 KQKV 493
>Z82090-4|CAB05008.2| 543|Caenorhabditis elegans Hypothetical
protein ZK337.2 protein.
Length = 543
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Frame = -3
Query: 589 CVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANKADIISV-YMKGNYI-----LHSE 428
C C F + KH S +S + +K ++ S + + + + LH+
Sbjct: 334 CTLCGQAFAVHDRLAKHIASRHRQRSCTLDDASKVHKCNMCSKSFSRSDMLTRHMRLHTG 393
Query: 427 GASFTCVNCNGVFXSIRSLLMHL-VHAEHFAYRPP 326
++C CN VF L HL H Y P
Sbjct: 394 AKPYSCPTCNQVFSRSDHLSTHLRTHTGEKPYACP 428
>U41027-2|AAV28335.1| 447|Caenorhabditis elegans Hypothetical
protein R08E3.4a protein.
Length = 447
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/85 (16%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = -3
Query: 604 IEDLKCVYCNFDFRDNREAVKHALSNVY----HQSAVAETKLNANKADIISVYMKGNYIL 437
++ +C +C F + +H+++++ V++ + ++ + + +++ + +
Sbjct: 158 VKPYECRFCKKRFFRKDQMQEHSMTHIKTGFGFDCPVSQCNMQFSQHNALRAHLEETHTI 217
Query: 436 HSEGASFTCVNCNGVFXSIRSLLMH 362
S + +C CN +F + R LL+H
Sbjct: 218 SSTNPA-SCKRCNLMFANSRRLLLH 241
>U41027-1|AAV28336.1| 480|Caenorhabditis elegans Hypothetical
protein R08E3.4b protein.
Length = 480
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/85 (16%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = -3
Query: 604 IEDLKCVYCNFDFRDNREAVKHALSNVY----HQSAVAETKLNANKADIISVYMKGNYIL 437
++ +C +C F + +H+++++ V++ + ++ + + +++ + +
Sbjct: 158 VKPYECRFCKKRFFRKDQMQEHSMTHIKTGFGFDCPVSQCNMQFSQHNALRAHLEETHTI 217
Query: 436 HSEGASFTCVNCNGVFXSIRSLLMH 362
S + +C CN +F + R LL+H
Sbjct: 218 SSTNPA-SCKRCNLMFANSRRLLLH 241
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = -3
Query: 589 CVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANKADIISVYMKGNYILHSEGASFTC 410
CV C+ F N EA++ V+ S + KA + + LH + C
Sbjct: 30 CVMCSKAF-PNAEALQIHTDQVHDLSRLKHRCKLCGKAYKRKKNLDAHMALHLK--EIQC 86
Query: 409 VNCNGVFXSIRSLLMHLV 356
NC+ VF S +SL H++
Sbjct: 87 DNCSLVFQSEKSLQSHII 104
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = -3
Query: 589 CVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANKADIISVYMKGNYILHSEGASFTC 410
CV C+ F N EA++ V+ S + KA + + LH + C
Sbjct: 148 CVMCSKAF-PNAEALQIHTDQVHDLSRLKHRCKLCGKAYKRKKNLDAHMALHLK--EIQC 204
Query: 409 VNCNGVFXSIRSLLMHLV 356
NC+ VF S +SL H++
Sbjct: 205 DNCSLVFQSEKSLQSHII 222
>AL031635-6|CAA21044.1| 761|Caenorhabditis elegans Hypothetical
protein Y47D3B.9 protein.
Length = 761
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -3
Query: 640 NEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKHALS--NVYHQSAVAE 500
+E+ + + LN+ ++++C+YC + N + K N YHQ + +
Sbjct: 353 SEIWEHYKCLNEKQNVECIYCWKVLKRNDSSTKSMWGHMNAYHQDILRD 401
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical
protein M04B2.1 protein.
Length = 870
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 235 FKCGVCDADIEEGEXAKRHVLSPKHRENMG 146
F C +CDA ++E E +H L H++ +G
Sbjct: 713 FVCEICDASVQEKEKYLQH-LQTTHKQMVG 741
>U61955-7|AAV58862.1| 456|Caenorhabditis elegans Hypothetical
protein M03D4.4b protein.
Length = 456
Score = 27.5 bits (58), Expect = 9.5
Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 2/142 (1%)
Frame = -3
Query: 655 RLAVNNEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANKA 476
+L++N + ++ + +C C+ F RE H H + K
Sbjct: 19 QLSMNPTTPSEKSSSGEKGRYECEDCHEMFAVKRELATHMR---IHSGEQPHSCTQCGKE 75
Query: 475 DIISVYMKGNYILHSEGASFTCVNCNGVFXSIRSLLMHL-VHAEHFAYR-PPAECTFRYY 302
+K +++ H+ S C +CN F L HL +H+ + P TF +
Sbjct: 76 FGTRQLLKKHWMWHTGERSHVCPHCNKAFFQKGHLTQHLMIHSGGRPHECPQCHKTFIFK 135
Query: 301 LELKHNINMLAKNKYVYYSFGR 236
+L ++ + + + GR
Sbjct: 136 FDLNRHMKIHQERGFSCQQCGR 157
>U61955-6|AAC24408.2| 505|Caenorhabditis elegans Hypothetical
protein M03D4.4a protein.
Length = 505
Score = 27.5 bits (58), Expect = 9.5
Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 2/142 (1%)
Frame = -3
Query: 655 RLAVNNEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANKA 476
+L++N + ++ + +C C+ F RE H H + K
Sbjct: 68 QLSMNPTTPSEKSSSGEKGRYECEDCHEMFAVKRELATHMR---IHSGEQPHSCTQCGKE 124
Query: 475 DIISVYMKGNYILHSEGASFTCVNCNGVFXSIRSLLMHL-VHAEHFAYR-PPAECTFRYY 302
+K +++ H+ S C +CN F L HL +H+ + P TF +
Sbjct: 125 FGTRQLLKKHWMWHTGERSHVCPHCNKAFFQKGHLTQHLMIHSGGRPHECPQCHKTFIFK 184
Query: 301 LELKHNINMLAKNKYVYYSFGR 236
+L ++ + + + GR
Sbjct: 185 FDLNRHMKIHQERGFSCQQCGR 206
>U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical
protein F47E1.3 protein.
Length = 594
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/95 (21%), Positives = 35/95 (36%)
Frame = -3
Query: 460 YMKGNYILHSEGASFTCVNCNGVFXSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKHNI 281
++K + + F C CN F L +H++H H +RP + ++
Sbjct: 481 HLKYTRCVDNGNRKFPCTICNRSFEKRDRLRIHILHV-HENHRPHVCSVCQKSFSQSSSL 539
Query: 280 NMLAKNKYVYYSFGRFKCGVCDADIEEGEXAKRHV 176
N K+ V+ +KC C + HV
Sbjct: 540 N---KHLRVHSGERPYKCSFCPKAFTASSILRTHV 571
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 235 FKCGVCDADIEEGEXAKRHVLSPKHRENMG 146
F C +CDA ++E E +H L H++ +G
Sbjct: 713 FVCEICDASVQEKEKYLQH-LQTTHKQMVG 741
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,957,216
Number of Sequences: 27780
Number of extensions: 294865
Number of successful extensions: 1045
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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