Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F05
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    25   0.89 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.7  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.3  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 421 SFTCVNCNGVFXSIRSLLMHL 359
           SF+C  C  V+ S+ +L MH+
Sbjct: 16  SFSCKYCEKVYVSLGALKMHI 36


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 295 LKHNINMLAKNKYVYYSFG 239
           L+H++N++ + KY+ Y FG
Sbjct: 31  LEHSMNVIHEWKYIDYDFG 49


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 81  TSTXICLASHSTADASSLMYVAPIFSLCFGDRTCRFAXSPSS--MSASQTPHLN 236
           TS+ +     + A +++L   A + +   GD++CR+  S +     AS  P +N
Sbjct: 115 TSSMVPGFGSTAASSAALAAAAAVDAATAGDKSCRYTASLAGNVAPASADPMVN 168


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -3

Query: 436 HSEGASFTCVNCNGVFXSIRSLLMHLVHAEH 344
           HS    + C NC        SL +HL    H
Sbjct: 39  HSNVYQYRCANCTYATKYCHSLKLHLRKYSH 69


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 400 NGVFXSIRSLLMHLVHAEHFAY 335
           NGVF SI SLL+  +   H  +
Sbjct: 542 NGVFTSIASLLLLNLSENHIEW 563


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = -3

Query: 418 FTCVNCNGVFXSIRSLLMHLVHAEHFAYRPPAECTF-RYYLELKHNINMLAKNKYVYYSF 242
           + C  C   F     L  H  +  H   +P  +C +      +K N+++   ++ ++   
Sbjct: 92  YRCNICGKTFAVPARLTRH--YRTHTGEKP-YQCEYCSKSFSVKENLSV---HRRIHTKE 145

Query: 241 GRFKCGVCDADIEEGEXAKRHV 176
             +KC VC+   E      RH+
Sbjct: 146 RPYKCDVCERAFEHSGKLHRHM 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,039
Number of Sequences: 438
Number of extensions: 3672
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)