Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F02
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    28   1.5  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    26   6.0  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   6.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.9  

>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 289 SLTTTNSLYFYKFPVMTFTKSLKLQYSWHNQFIIRRIKLCSFIRTLPHFKILYNFIFHF 465
           +LTTT+ +  +KFP+ +  K    +  +   F +     C  + +L   K  +NF+F F
Sbjct: 143 NLTTTSEIPTFKFPIFSKRKYNDTENLYEQPFHL-EFDTCQELLSLFFLKQYHNFMFVF 200


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 317 KYNELVVVSENLKFLTWNKKSIAFIYGSRIKNNNHYTTGSFFSSLY-AFNII*EXLLF 147
           ++  L+   E  K   W+K+   F YG  +  N   T  +FF +LY +F  + E  +F
Sbjct: 443 EFENLIKQQEEAKKSLWSKRFSRFYYGHYVFVN---TCHNFFLTLYQSFTEVDENSIF 497


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/79 (24%), Positives = 30/79 (37%)
 Frame = -3

Query: 241 MVQESKTITTILQAASLVPYMHLISFEKXYCSNIFSAXHTCFHFNLRLKQHTNKKAQMMK 62
           MVQE K +    +      Y   I+ +K Y +N+          + R+K+     AQ+  
Sbjct: 339 MVQEEKLLNKQRKYGQNYEYAKQIAKDKTYSNNLDYLDENAGKLSNRMKRGDVSLAQISS 398

Query: 61  FDDLL*EKRGFNDIPFCCN 5
             DL       +  P C N
Sbjct: 399 GGDLKKINHVLDTCPLCLN 417


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +1

Query: 292  LTTTNSLYFYKFPVMTFTKSLKLQYSWHNQFIIRRIKLCSFIRTLPHFKILYNFIF 459
            + + NS   YK         LKL   W N ++   +  C   R   + K+L  ++F
Sbjct: 2327 IASANSNIVYKLSYDVIRHFLKLVVLWKNIYVWTNVPDCDISRFYCYTKMLGEWMF 2382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,176
Number of Sequences: 5004
Number of extensions: 48329
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)