Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F02
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024498-8|AAF39807.3|  305|Caenorhabditis elegans Serpentine re...    31   0.60 
AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF039045-7|AAB94207.1|  333|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AF024498-8|AAF39807.3|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein105 protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = -3

Query: 376 CAMNIVVSKIL*MSLLGIYKSTMN*LL*VKILNF*HGTK-KASLSFMVQESKTITTILQA 200
           CA+ ++   I+ +  LG++ + +N L+ +K+      +K  +S+SF  +    I   LQ+
Sbjct: 164 CALEMIYVLIIIIFSLGVFTNILNILIAIKLFILSKYSKLLSSVSFQNRRKSRIYLFLQS 223

Query: 199 ASLVPYMHLISFEKXYCSNIFSAXHTC 119
                ++ ++     + SN++ A  TC
Sbjct: 224 C-FQDWIVVVDILNNFGSNVYCANRTC 249


>AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical
           protein F15E11.2 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 314 YNELVVVSENLKFLTWNKKSIAFIYGSRIKNNNHYTTGSFFSSL-YAFNI 168
           +  LV+  +N +F++  KK +  I+G  + NN + T   F  SL Y +++
Sbjct: 247 FGSLVIGPDNKQFVSHLKK-VEVIFGGLVVNNTNLTNIDFLESLKYIYHL 295


>AF039045-7|AAB94207.1|  333|Caenorhabditis elegans Hypothetical
           protein F15E11.11 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 314 YNELVVVSENLKFLTWNKKSIAFIYGSRIKNNNHYTTGSFFSSL-YAFNI 168
           +  LV+  +N +F++  KK +  I+G  + NN + T   F  SL Y +++
Sbjct: 280 FGSLVIGPDNEQFVSHLKK-VEVIFGGLVVNNTNLTNIDFLESLKYIYHL 328


>AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical
           protein Y19D10B.5 protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 314 YNELVVVSENLKFLTWNKKSIAFIYGSRIKNNNHYTTGSFFSSL-YAFNI 168
           +  LV+  EN +F++   K +  I+G  + NN + T   F  SL Y +++
Sbjct: 425 FGSLVIGPENEQFVS-QLKYVEMIFGRLVVNNTNLTNIDFLQSLKYIYSL 473


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,916,476
Number of Sequences: 27780
Number of extensions: 263743
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)