Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E18
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    28   1.5  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    26   4.4  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   5.9  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 272 FTLFSNSNSDKNVSSLKCFSNENVSQIL 189
           F+L  N N D N SSLKC  N  +S ++
Sbjct: 345 FSLTPNDNYDVNDSSLKCRVNSLISLVI 372


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 193 ICETFSFEKHLSDETFLSEFEFENNVNVLMDQVYISIEIQE 315
           +  TFSF+ H+   +++ E    N   ++ D   +  ++QE
Sbjct: 522 VAGTFSFQLHIMSNSYVGEDVISNLTMIVKDTSVLQEQLQE 562


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 239  NVSSLKCFSNENVSQILF*FIMLLKGTNKLYLVMCFIEMFI 117
            NVS LK F + N+ ++   +IM L+G ++L      ++ F+
Sbjct: 1390 NVSYLKEFLSSNIRRLSSHWIMALRGYSRLQFGPSLVKDFV 1430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,093
Number of Sequences: 5004
Number of extensions: 45137
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)