Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E18
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81496-7|CAB04073.1|  301|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z92835-5|CAB07398.1|  168|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine re...    28   7.2  

>Z81496-7|CAB04073.1|  301|Caenorhabditis elegans Hypothetical
           protein F09C6.6 protein.
          Length = 301

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +1

Query: 190 KICETFSFEKHLSDETFLSEFEFEN-NVNVLMDQVYISIEIQE 315
           K C+TF F +++  + F   F FEN N+++L     I++++++
Sbjct: 188 KNCKTFKFSRYVDSKLFSHLFHFENFNISMLDFNTQIAMKMRD 230


>Z92835-5|CAB07398.1|  168|Caenorhabditis elegans Hypothetical
           protein H19N07.3 protein.
          Length = 168

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 442 CTLAD*EKILKTNAVLINEKWSYIF 368
           CTL +   ILK +  L+ EKWS +F
Sbjct: 40  CTLQERTDILKVSKSLVEEKWSSLF 64


>AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 31 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 473 MFKFKFYQICNHNL*VLIFKPYFSLEMIEITLVL*GKPYYFLY 601
           MF FKF+  C ++L  + +   F   +   TL+   K Y+ ++
Sbjct: 86  MFPFKFFIFCQYHLGFMSYSNLFLTSINRFTLIFMPKRYFQIW 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,928,423
Number of Sequences: 27780
Number of extensions: 244069
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)