Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E16
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    27   2.2  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    26   5.1  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    26   6.8  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    25   9.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.0  

>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 540 YLVADSEGKIYRRNRKYILERVPDSSPDTKNNCRTTKVKNHNFAVDDIPDIVLDN 376
           Y++ D + K    N K +LE V D S   +N  +++K    + +++ I ++VL N
Sbjct: 315 YMLVDEKNKFKTENFKKVLE-VLDHSTRQENYSKSSKKVKKSSSLERIINMVLSN 368


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 234 ANLPTPS-SRTSRGGLNEQCSNDKIXKEWTS 145
           +NLP P+ S T   GLN Q SND    + T+
Sbjct: 211 SNLPIPTGSLTKIDGLNNQLSNDLTRSQTTN 241


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 537 LVADSEGKIYRRNRKYILERVPDSSPDTKNNCRTTKVKNHNFAVDDIPDIVLD 379
           L+   E   + +   Y+ + +PD       N  T  + N N AVD  PD  LD
Sbjct: 202 LIPYEERHTFEKGSYYLCDVIPDKLAAISIN--TLYLSNKNAAVDGCPDDNLD 252


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
 Frame = -3

Query: 666 NYDKCAKELPQLKLHQEVYFKKTLDSNWQKGKIIKNCTEPRSYLVADSEGKIYRRN---- 499
           +Y K  +E+   K   +V   + LD+ W++   +K   E     +++   ++   N    
Sbjct: 116 SYQKEIEEVRNEKEATQVKIHELLDAKWKEIAELKTQIEKNDQALSEKNHEVMVSNQALQ 175

Query: 498 -RKYILERVPDSSPDTKNNCRTTKVKNHNFAVDDIPDIVLDNSMCQPSAKYVLQEPSLEK 322
            +   L  +     D++     TK K    A   + ++ + N   + S K V     LEK
Sbjct: 176 MKDTNLTNLEKLFADSREQLE-TKCKELAAAEQQLQELSVHNQQLEESIKQVSSSIELEK 234

Query: 321 I 319
           I
Sbjct: 235 I 235


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 694  IFTVTIKQFRLKCASRYWYE 753
            IF V +  FR KC   +WY+
Sbjct: 1105 IFEVLLSDFRHKCYDPHWYK 1124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,130
Number of Sequences: 5004
Number of extensions: 53050
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)