Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E16
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466...    31   1.0  
10_06_0112 + 10899079-10900656,10900761-10900920,10900948-109010...    31   1.3  
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142...    30   1.8  
06_03_0860 + 25484826-25485758,25486155-25486406                       30   2.3  

>01_07_0374 +
           43144861-43144998,43145695-43145794,43146499-43146651,
           43147383-43150081
          Length = 1029

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 543 SYLVADSEG-KIYRRNRKYILERVPDSSPDTKNNCRTTKVKNHNFAVDDIPDIVL 382
           S  + +SE  K+ R   K ++E    S PD+ + C     KNH F ++++  I L
Sbjct: 356 SQAMGESERVKVLREKLKAVMEGHGKSLPDSPDPCDKNVRKNHGFEMEEVQHIKL 410


>10_06_0112 +
           10899079-10900656,10900761-10900920,10900948-10901028,
           10901264-10901517
          Length = 690

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -3

Query: 759 NSLIPV---PRSTLKPKLFYCDSKYYNHLNSVXKNYDKCAKELPQLKLHQEVYFKKTLDS 589
           N+  PV   P +  K + FYC+ K  N ++    NY  C  +  ++   + V    +++S
Sbjct: 594 NNCYPVVVPPTNAEKVRCFYCEYKGINIIHPADGNYHGCDTDFEKMARRKHV-LTNSIES 652

Query: 588 NWQKGKIIKN 559
            +  G ++ N
Sbjct: 653 VFNNGLLVSN 662


>05_01_0197 -
           1417672-1417899,1418921-1418974,1419267-1419552,
           1421768-1422291
          Length = 363

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -3

Query: 510 YRRNRKYILERVPDSSPDTKNNCRTTKVKNH-NFAVDDIPDIVLDNSMCQPSAKYVLQEP 334
           +RR R +  E+    SP T   CRT K K+  +F     P  ++D+     S+   L+E 
Sbjct: 152 WRRGRSWAPEKDRGVSPATAVVCRTKKTKSSVDFGFPSYPTNLIDHGQTFFSSSRELRER 211

Query: 333 SLEKIVCGSNMAT 295
           ++ ++  G  + T
Sbjct: 212 AIGRVCHGLILIT 224


>06_03_0860 + 25484826-25485758,25486155-25486406
          Length = 394

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 693 YNHLNSVXKNYDKCAKELPQLKLHQEVYFKKTLDSNWQKGKIIKNCTEP 547
           ++++ SV + YD C KE   +  HQE+    +    ++ G I  N + P
Sbjct: 343 FSYIVSVLEKYDHCVKEGMPIMAHQELRIWSSFAKIFRMGCITNNLSIP 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,030,151
Number of Sequences: 37544
Number of extensions: 294847
Number of successful extensions: 576
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)