Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_E16
(764 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70208-4|CAC42306.1| 879|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF200707-1|AAF15884.1| 879|Caenorhabditis elegans UNC-84B protein. 30 2.1
AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein. 30 2.1
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 29 2.7
AC024206-4|AAK67240.1| 564|Caenorhabditis elegans Hypothetical ... 29 2.7
AC024206-3|AAF36052.1| 561|Caenorhabditis elegans Hypothetical ... 29 2.7
AL117206-1|CAB60446.1| 644|Caenorhabditis elegans Hypothetical ... 29 4.8
AF098506-1|ABN43085.1| 145|Caenorhabditis elegans Hypothetical ... 29 4.8
>Z70208-4|CAC42306.1| 879|Caenorhabditis elegans Hypothetical
protein F54B11.3b protein.
Length = 879
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 424 FYFSCSTIVFCIR*TVWHSF*NIFSVSSVYFSFTISY*IRTGLSTIFYNFSFLPI 588
F ++ S V+ T++ N FS SS ++ TG++ IFYNF + PI
Sbjct: 678 FIYNASNAVYNFFSTIFAGLLN-FSTSSQNSILSLLKSFGTGITNIFYNFIYAPI 731
>Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical
protein F54B11.3a protein.
Length = 1111
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 424 FYFSCSTIVFCIR*TVWHSF*NIFSVSSVYFSFTISY*IRTGLSTIFYNFSFLPI 588
F ++ S V+ T++ N FS SS ++ TG++ IFYNF + PI
Sbjct: 678 FIYNASNAVYNFFSTIFAGLLN-FSTSSQNSILSLLKSFGTGITNIFYNFIYAPI 731
>AF200707-1|AAF15884.1| 879|Caenorhabditis elegans UNC-84B protein.
Length = 879
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 424 FYFSCSTIVFCIR*TVWHSF*NIFSVSSVYFSFTISY*IRTGLSTIFYNFSFLPI 588
F ++ S V+ T++ N FS SS ++ TG++ IFYNF + PI
Sbjct: 678 FIYNASNAVYNFFSTIFAGLLN-FSTSSQNSILSLLKSFGTGITNIFYNFIYAPI 731
>AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.
Length = 1111
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 424 FYFSCSTIVFCIR*TVWHSF*NIFSVSSVYFSFTISY*IRTGLSTIFYNFSFLPI 588
F ++ S V+ T++ N FS SS ++ TG++ IFYNF + PI
Sbjct: 678 FIYNASNAVYNFFSTIFAGLLN-FSTSSQNSILSLLKSFGTGITNIFYNFIYAPI 731
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/103 (24%), Positives = 44/103 (42%)
Frame = -3
Query: 663 YDKCAKELPQLKLHQEVYFKKTLDSNWQKGKIIKNCTEPRSYLVADSEGKIYRRNRKYIL 484
Y + K+ Q + Q V T + +KG++ T R V+ ++ +RNRK
Sbjct: 797 YSESRKKRTQAIMSQ-VQTPPTAPGSSKKGRVGSGGTRGRKRKVSSESVQLKKRNRK-SS 854
Query: 483 ERVPDSSPDTKNNCRTTKVKNHNFAVDDIPDIVLDNSMCQPSA 355
R +SP + + + + V D+PD + D+ P A
Sbjct: 855 SRATTASPGPSEDRFSFQRPQDSDDVTDVPDDMTDHEDLLPEA 897
>AC024206-4|AAK67240.1| 564|Caenorhabditis elegans Hypothetical
protein Y74C9A.4b protein.
Length = 564
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -3
Query: 492 YILERVPDSSPDTKNNCRTTKVKNHNFAVDDIPDIVLDNSMCQPSAKYVLQEPSLEK 322
YI+E+ ++ P +N CR T+ + A+ I +I + MC P V Q +E+
Sbjct: 379 YIVEQSIEADPIDENTCRMTRCFDTPAALALIDNIKRKHHMCVPLVWRVKQTKCMEE 435
>AC024206-3|AAF36052.1| 561|Caenorhabditis elegans Hypothetical
protein Y74C9A.4a protein.
Length = 561
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -3
Query: 492 YILERVPDSSPDTKNNCRTTKVKNHNFAVDDIPDIVLDNSMCQPSAKYVLQEPSLEK 322
YI+E+ ++ P +N CR T+ + A+ I +I + MC P V Q +E+
Sbjct: 376 YIVEQSIEADPIDENTCRMTRCFDTPAALALIDNIKRKHHMCVPLVWRVKQTKCMEE 432
>AL117206-1|CAB60446.1| 644|Caenorhabditis elegans Hypothetical
protein Y67A10A.1 protein.
Length = 644
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 726 KPKLFYCDSKYYNHLNSVXKNYDKCAKELPQLKLHQEVYFKK 601
KP + + ++Y N++ + + DK +++ + H E Y KK
Sbjct: 489 KPDVLFIVARYMNNIKNPVQKDDKIVQQINETIAHYEKYVKK 530
>AF098506-1|ABN43085.1| 145|Caenorhabditis elegans Hypothetical
protein H29C22.1 protein.
Length = 145
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = -3
Query: 507 RRNRKYILERVPDS-SPDTKNNCRTTKVKNHNFAVDDIPDIVLDNSMCQPS-AKYVLQEP 334
R N++ ++ + D+ +PD N R T + + A + D+++D +P+ A++++ E
Sbjct: 62 RYNKEQTVDYIIDTLNPDDYNATRLTAIDRPSMANGIVFDVIIDGITDEPTYAEFIMTED 121
Query: 333 SLEKI 319
K+
Sbjct: 122 EQNKV 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,416,970
Number of Sequences: 27780
Number of extensions: 288074
Number of successful extensions: 778
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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