Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E15
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    29   0.42 
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    29   0.73 
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   1.3  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.2  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    25   6.8  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    25   9.0  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   9.0  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   9.0  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    25   9.0  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -1

Query: 490 KELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEKLTK 335
           K L +   +S ++ LSQ K  ++ +TTS     D +S+  +   D+++ L K
Sbjct: 689 KLLLNEQIESLNDQLSQLKTEMESVTTSKESLADYLSNLKERHNDELDSLNK 740


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 571 LTNKISLNAGKGRQAIEWVIGKFDTEIKELASSACKSTDELLSQTK 434
           L N++ +++    +  +WV  K D E+KE+ +     TD  L  T+
Sbjct: 641 LVNRLDVDSFLHPKTPKWVFNKQDQEVKEIKALTSTVTDSTLVDTQ 686


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 448 LSQTKKSIDDITTSARRSMDDISSKAKS 365
           L   KKS DDITT  +R M+D  S  +S
Sbjct: 177 LCSPKKSKDDITTPKKRLMEDTYSPRES 204


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 360 SVLFALDEISSIDLLADVVMSSIDFFVCDNNSSVLLQAELA 482
           +++  L     I LL  +++ S+    CDNN + +LQ  +A
Sbjct: 554 NIIDKLTSNEQISLLLKIIIPSLTTLACDNNGTHVLQKCIA 594


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 478 SSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEK 344
           +SA  S+DE   Q       + +S++  + +  S+ KS L D+EK
Sbjct: 267 TSAKVSSDEYARQVDTLDTKLNSSSKSKVQEEISRLKSELRDLEK 311


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 541 KGRQAIEWVIGKFDTEIKELASSACKST 458
           +G  A+E  + KFD ++KE  + A KST
Sbjct: 459 EGLSAVESAVAKFDAKVKE--AVAAKST 484


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -1

Query: 493 IKELASSACKSTDELLSQTKKSIDDITT--SARRSMDDISSKAKSTLDDIEKLTKANA 326
           + E A +A  + ++   + + S+D I+   +   + DD+SSK  ST D +E L   N+
Sbjct: 754 VNEAAKTAA-TIEQNEHEIQTSVDPISNVKAILPNADDVSSKNSSTEDQLECLRCGNS 810


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 448 LSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEK 344
           LSQ KKS DD+  S+R    ++S   K+ + +I K
Sbjct: 512 LSQVKKSNDDLQKSSRDVAANLSD-VKAKVSEIRK 545


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -1

Query: 625 EAVVTVQGVPLSSYMEDLLTNKISLN 548
           ++++ V+GV    +++ L TNKI+L+
Sbjct: 29  KSLIRVEGVDAVKFLQGLTTNKITLD 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,896
Number of Sequences: 5004
Number of extensions: 48053
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)