Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E14
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    29   0.52 
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    29   0.52 
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    28   1.2  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   2.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.1  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    27   2.8  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    27   2.8  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   8.5  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    25   8.5  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 384 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -2

Query: 449 NYTSLKKKALRLQNIQRAWTN*QNLKTIMKMISNYD*FYSFFNNHTMGLFIFVKICED 276
           NY  LKK+  R +N Q  W+       +  +    D  YSF  N +  +   ++ CE+
Sbjct: 21  NYDKLKKEIKR-RNDQGGWSEEDESDFVELLEKELDKVYSFQKNKSAEVMERIRFCEE 77


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 492 IEKLHRDVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYEDDF 352
           I+K+ RD+   +  K  K  E   E ++Y   LD+     +  E+D+
Sbjct: 774 IKKIERDMQEWKHNKGSKMAELEKEFNQYKHKLDEFTPILEKSENDY 820


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 356 ISNYD*FYSFFNNHTMGLFI-FVKICED 276
           +SN +  Y FFNNH +G+   F  I  D
Sbjct: 856 LSNKELLYDFFNNHILGILAEFSNILND 883


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -1

Query: 555 EDVESCAVIAGYHNGTFLANMIEKLHRDVSRI--RFAKLHKFKEEGLEASEYTESLDKLA 382
           +D++  A   G  N T +  +  +L    S +  R A LH +  EG++  E+TE+   + 
Sbjct: 359 KDLKMSATFIG--NSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416

Query: 381 EFKDNYE 361
           +    Y+
Sbjct: 417 DLVSEYQ 423


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -1

Query: 600 KNLNKYGFIXNDNRLEDVESCAVIAGYHNGTFLANMIEK 484
           KNL+ YG     NRL+DV++   IA   +  F AN I++
Sbjct: 374 KNLDDYG---EGNRLDDVDAEDKIARKRSLKFYANQIDQ 409


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 510  TFLANMIEKLHRDVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKD 370
            TF+  +++K++   SR+    LH F E   + +EY   L  L E KD
Sbjct: 863  TFI-KLMKKVNILESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKD 908


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -1

Query: 447 LHKFKEEGLEASEYTESLDKLAEFKDNYEDDFEXXXXXXLFQQSHN 310
           L + +EE  E  E ++  D  A+F D   DD +         + HN
Sbjct: 391 LSRKEEEEEEDEEASDFEDSFADFSDGEADDLDESRWRKEAAKEHN 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,550
Number of Sequences: 5004
Number of extensions: 44057
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)