Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_E14
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 33 0.23
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469... 32 0.40
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 31 0.53
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 29 2.2
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 28 5.0
06_03_0849 - 25344261-25344416,25344652-25344808,25344917-253450... 27 8.7
06_01_0599 - 4327671-4330034 27 8.7
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 27 8.7
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530... 27 8.7
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -1
Query: 516 NGTFLANMIEKLHR--DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
N T +A + ++ R D+ + A +H + EG+E E++E+ + LA + +YE+
Sbjct: 461 NNTAVAEVFSRIDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 515
>09_04_0202 -
15544498-15545037,15546043-15546449,15546874-15546977,
15547580-15547788,15548092-15549428,15551680-15551941
Length = 952
Score = 31.9 bits (69), Expect = 0.40
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = -1
Query: 564 NRLEDVESCAVIAGYHNGTFLANMIEKLHRDVSRIR 457
N ++++ GYH+G+F+ N++E L+ + S+I+
Sbjct: 682 NSIDELRKSGENIGYHDGSFVKNLLEDLNFNTSKIK 717
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = -1
Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
N T +A + ++ H+ D+ + A +H + EG+E E++E+ + LA + +YE+
Sbjct: 380 NNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -1
Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
N T + + ++ H+ D+ + A +H + EG+E E++E+ + LA + +YE+
Sbjct: 380 NSTSVVEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -1
Query: 474 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
D+ + A +H + EG+E E++E+ + LA + +YE+
Sbjct: 396 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>06_03_0849 -
25344261-25344416,25344652-25344808,25344917-25345056,
25345160-25345295,25345392-25345663,25345809-25346068,
25346716-25347035,25347287-25347352,25347439-25347510,
25347609-25347680,25347776-25347858,25348068-25348139,
25348389-25348485,25348918-25349050,25349158-25349236
Length = 704
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 213 HDLVHQFQQTTYIITFSHR 157
HD++H F T+ I+T++HR
Sbjct: 479 HDILHFFDDTSKILTWNHR 497
>06_01_0599 - 4327671-4330034
Length = 787
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -1
Query: 549 VESCAVIAGYHNGTFLANMIEKLHRDVSRIRFAK 448
+ + AV AGY TF+A+ + KL+ +SR+ A+
Sbjct: 136 LHALAVAAGYAADTFVASALAKLYFVLSRVDHAR 169
>03_06_0399 -
33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 423 LEASEYTESLDKLAEFKDNYEDD 355
+EA E +S D + FKDN EDD
Sbjct: 455 VEAEEEDDSDDDMMRFKDNEEDD 477
>01_06_1684 +
39151412-39151702,39152410-39152548,39152926-39153040,
39153232-39153332,39153688-39153809,39153885-39153976,
39155288-39155393,39155477-39155631,39155904-39156031,
39156349-39156479,39157171-39157268,39157371-39158162,
39158472-39158523
Length = 773
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +1
Query: 103 WKMMLIVCPTSTRVLHEATM*KSNNVCSLLKLVNQIMLFNNS 228
W ++ C T + VL ++ + +++C + KL+ +M + S
Sbjct: 165 WVATIVQCSTGSDVLRWRSVLEEDDICVVAKLLGDLMAYRAS 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,662,486
Number of Sequences: 37544
Number of extensions: 242844
Number of successful extensions: 473
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -