Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E14
         (600 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118952-1|AAM50812.1|  377|Drosophila melanogaster LD34822p pro...    54   1e-07
AF017777-11|AAC28411.1|  574|Drosophila melanogaster misato prot...    54   1e-07
AE014298-3139|AAF50817.1|  574|Drosophila melanogaster CG1424-PA...    54   1e-07
M14645-1|AAA28987.1|  450|Drosophila melanogaster protein ( D.me...    29   3.7  
M14643-1|AAA28985.1|  450|Drosophila melanogaster protein ( D.me...    29   3.7  
BT016118-1|AAV37003.1|  450|Drosophila melanogaster LD07757p pro...    29   3.7  
BT012506-1|AAS93777.1|  450|Drosophila melanogaster AT25469p pro...    29   3.7  
BT003630-1|AAO39634.1|  450|Drosophila melanogaster AT26363p pro...    29   3.7  
AY084208-1|AAL89946.1|  450|Drosophila melanogaster SD07763p pro...    29   3.7  
AE014297-627|AAN13341.1|  450|Drosophila melanogaster CG2512-PB,...    29   3.7  
AE014297-626|AAF54007.1|  450|Drosophila melanogaster CG2512-PA,...    29   3.7  
AE014297-554|AAF54067.1|  450|Drosophila melanogaster CG1913-PA ...    29   3.7  
M14644-1|AAA28986.1|  449|Drosophila melanogaster protein ( D.me...    29   4.8  
AY113631-1|AAM29636.1|  449|Drosophila melanogaster RH71862p pro...    29   4.8  
AE014297-1015|AAF54433.1|  449|Drosophila melanogaster CG9476-PA...    29   4.8  

>AY118952-1|AAM50812.1|  377|Drosophila melanogaster LD34822p
           protein.
          Length = 377

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 24/64 (37%), Positives = 36/64 (56%)
 Frame = -1

Query: 549 VESCAVIAGYHNGTFLANMIEKLHRDVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKD 370
           V+S  ++A   N T L   ++ +H    R++ AKL  +   GLE  EY  +LD+L EF+D
Sbjct: 310 VDSAPMLAAVQNSTKLGEHLDNVHAQSHRVQLAKLQAYSNSGLERDEYDTALDQLLEFRD 369

Query: 369 NYED 358
            Y D
Sbjct: 370 LYAD 373


>AF017777-11|AAC28411.1|  574|Drosophila melanogaster misato
           protein.
          Length = 574

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 24/64 (37%), Positives = 36/64 (56%)
 Frame = -1

Query: 549 VESCAVIAGYHNGTFLANMIEKLHRDVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKD 370
           V+S  ++A   N T L   ++ +H    R++ AKL  +   GLE  EY  +LD+L EF+D
Sbjct: 507 VDSAPMLAAVQNSTKLGEHLDNVHAQSHRVQLAKLQAYSNSGLERDEYDTALDQLLEFRD 566

Query: 369 NYED 358
            Y D
Sbjct: 567 LYAD 570


>AE014298-3139|AAF50817.1|  574|Drosophila melanogaster CG1424-PA
           protein.
          Length = 574

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 24/64 (37%), Positives = 36/64 (56%)
 Frame = -1

Query: 549 VESCAVIAGYHNGTFLANMIEKLHRDVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKD 370
           V+S  ++A   N T L   ++ +H    R++ AKL  +   GLE  EY  +LD+L EF+D
Sbjct: 507 VDSAPMLAAVQNSTKLGEHLDNVHAQSHRVQLAKLQAYSNSGLERDEYDTALDQLLEFRD 566

Query: 369 NYED 358
            Y D
Sbjct: 567 LYAD 570


>M14645-1|AAA28987.1|  450|Drosophila melanogaster protein (
           D.melanogaster alpha-tubulin gene (alpha-3), complete
           cds. ).
          Length = 450

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>M14643-1|AAA28985.1|  450|Drosophila melanogaster protein (
           D.melanogaster alpha-tubulin gene (alpha-1), complete
           cds. ).
          Length = 450

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>BT016118-1|AAV37003.1|  450|Drosophila melanogaster LD07757p
           protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>BT012506-1|AAS93777.1|  450|Drosophila melanogaster AT25469p
           protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>BT003630-1|AAO39634.1|  450|Drosophila melanogaster AT26363p
           protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>AY084208-1|AAL89946.1|  450|Drosophila melanogaster SD07763p
           protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>AE014297-627|AAN13341.1|  450|Drosophila melanogaster CG2512-PB,
           isoform B protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>AE014297-626|AAF54007.1|  450|Drosophila melanogaster CG2512-PA,
           isoform A protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>AE014297-554|AAF54067.1|  450|Drosophila melanogaster CG1913-PA
           protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
           N T +A    +L H+ D+   + A +H +  EG+E  E++E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434


>M14644-1|AAA28986.1|  449|Drosophila melanogaster protein (
           D.melanogaster alpha-tubulin gene (alpha-2), complete
           cds. ).
          Length = 449

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
           N T +A    +L H+ D+   + A +H +  EG+E  E+ E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFAEAREDLAALEKDYEE 434


>AY113631-1|AAM29636.1|  449|Drosophila melanogaster RH71862p
           protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
           N T +A    +L H+ D+   + A +H +  EG+E  E+ E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFAEAREDLAALEKDYEE 434


>AE014297-1015|AAF54433.1|  449|Drosophila melanogaster CG9476-PA
           protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
           N T +A    +L H+ D+   + A +H +  EG+E  E+ E+ + LA  + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFAEAREDLAALEKDYEE 434


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,007,301
Number of Sequences: 53049
Number of extensions: 457416
Number of successful extensions: 912
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)