Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_E14
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 31 0.63
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 31 0.63
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 30 1.1
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 30 1.1
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 30 1.1
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 30 1.1
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 30 1.1
AL023832-1|CAA19475.1| 85|Caenorhabditis elegans Hypothetical ... 30 1.1
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 29 1.9
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 29 1.9
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 29 1.9
AF016685-1|AAG24144.2| 300|Caenorhabditis elegans Hypothetical ... 29 1.9
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 29 1.9
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 29 1.9
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z92830-9|CAB07361.2| 461|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical p... 27 7.7
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical pr... 27 7.7
U14524-1|AAA50785.1| 461|Caenorhabditis elegans avermectin-sens... 27 7.7
AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A ... 27 7.7
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 27 7.7
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = -1
Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYEDDFEXX 343
N T +A +L H+ D+ + A +H + EG+E E++E+ + +A + +YE+ E
Sbjct: 386 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEIGEDE 445
Query: 342 XXXXLFQQSHNG 307
+ QS+ G
Sbjct: 446 LPDDIDDQSYRG 457
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = -1
Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYEDDFEXX 343
N T +A +L H+ D+ + A +H + EG+E E++E+ + +A + +YE+ E
Sbjct: 358 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEIGEDE 417
Query: 342 XXXXLFQQSHNG 307
+ QS+ G
Sbjct: 418 LPDDIDDQSYRG 429
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 474 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
D+ + A +H + EG+E E+TE+ + LA + +YE+
Sbjct: 394 DLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 474 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
D+ + A +H + EG+E E+TE+ + LA + +YE+
Sbjct: 394 DLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 474 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
D+ + A +H + EG+E E+TE+ + LA + +YE+
Sbjct: 394 DLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 474 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
D+ + A +H + EG+E E+TE+ + LA + +YE+
Sbjct: 394 DLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 474 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
D+ + A +H + EG+E E+TE+ + LA + +YE+
Sbjct: 394 DLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 474 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
D+ + A +H + EG+E E+TE+ + LA + +YE+
Sbjct: 394 DLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432
>AL023832-1|CAA19475.1| 85|Caenorhabditis elegans Hypothetical
protein Y19D2B.1 protein.
Length = 85
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 474 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
D+ + A +H + EG+E E+TE+ + LA + +YE+
Sbjct: 31 DLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 69
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -1
Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
N T +A +L H+ D+ + A +H + EG+E E++E+ + LA + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -1
Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
N T +A +L H+ D+ + A +H + EG+E E++E+ + LA + +YE+
Sbjct: 385 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 439
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -1
Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
N T +A +L H+ D+ + A +H + EG+E E++E+ + LA + +YE+
Sbjct: 379 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 433
>AF016685-1|AAG24144.2| 300|Caenorhabditis elegans Hypothetical
protein F59E11.8 protein.
Length = 300
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = -1
Query: 552 DVESC---AVIAGYHNGTFLANMIEKLHRDVSRIRFAKLHKFKEEGLEASEYTESLDKLA 382
D E C V+ YH G + ++K + I LH++ E +A+ Y+ L K+
Sbjct: 199 DEELCYILCVLCFYHIGNKIGGSMQKTTERLLNILADNLHEYYVEQKDATRYSYRLTKIL 258
Query: 381 EFKDNYE 361
+ Y+
Sbjct: 259 KISQQYK 265
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -1
Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
N T +A +L H+ D+ + A +H + EG+E E++E+ + LA + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -1
Query: 516 NGTFLANMIEKL-HR-DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
N T +A +L H+ D+ + A +H + EG+E E++E+ + LA + +YE+
Sbjct: 380 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -1
Query: 516 NGTFLANMIEKLHR--DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
N T +A ++L D+ + A +H + EG+E E++E+ + LA + +YE+
Sbjct: 375 NTTAIAEAWQRLDYKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 429
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -1
Query: 474 DVSRIRFAKLHKFKEEGLEASEYTESLDKLAEFKDNYED 358
D+ + A +H + EG+E E++E+ + +A + +YE+
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>Z92830-9|CAB07361.2| 461|Caenorhabditis elegans Hypothetical
protein F11A5.10 protein.
Length = 461
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 121 QLASSSTIYCELITTVGSYLC 59
QL ++ST YC +T G Y C
Sbjct: 243 QLTNTSTTYCTSVTNTGIYSC 263
>Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 121 QLASSSTIYCELITTVGSYLC 59
QL ++ST YC T GSY C
Sbjct: 435 QLTNTSTTYCTSKTNTGSYSC 455
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 121 QLASSSTIYCELITTVGSYLC 59
QL ++ST YC T GSY C
Sbjct: 256 QLTNTSTTYCTSKTNTGSYSC 276
>Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 121 QLASSSTIYCELITTVGSYLC 59
QL ++ST YC T GSY C
Sbjct: 435 QLTNTSTTYCTSKTNTGSYSC 455
>U14524-1|AAA50785.1| 461|Caenorhabditis elegans
avermectin-sensitive glutamate-gated chloride channel
GluCl alpha protein.
Length = 461
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 121 QLASSSTIYCELITTVGSYLC 59
QL ++ST YC +T G Y C
Sbjct: 243 QLTNTSTTYCTSVTNTGIYSC 263
>AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A
protein protein.
Length = 657
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 121 QLASSSTIYCELITTVGSYLC 59
QL ++ST YC T GSY C
Sbjct: 435 QLTNTSTTYCTSKTNTGSYSC 455
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 121 QLASSSTIYCELITTVGSYLC 59
QL ++ST YC T GSY C
Sbjct: 256 QLTNTSTTYCTSKTNTGSYSC 276
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,761,463
Number of Sequences: 27780
Number of extensions: 253948
Number of successful extensions: 632
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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