Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E13
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      28   4.2  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    28   4.2  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    28   4.2  
Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical
           protein F26D2.4 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 387 RYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAA-LPLALFD 506
           RYNY    D T+  + + R   HF+ + L   A LP AL D
Sbjct: 120 RYNYLVRTDSTSQSRKIKRVIQHFINYLLAFLAFLPAALED 160


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 460 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 549
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 460 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 549
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 460 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 549
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 460 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 549
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 460 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 549
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 469 SWAMQLCLWHYSTFSLFCPWVHLLHY 546
           SWA+ +C+   STF+L C    +LHY
Sbjct: 80  SWALLVCIIE-STFALICFLAVMLHY 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,011,582
Number of Sequences: 27780
Number of extensions: 200427
Number of successful extensions: 383
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)