Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E11
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    25   4.8  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    25   4.8  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    24   6.3  

>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 152 IPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFREKSSCT 27
           +P S+++  +IKY  EH Q + L   + SQ  +   ++S  T
Sbjct: 614 VPKSISLK-MIKYSKEHIQHELLEQLYKSQAFDKLLQESEVT 654


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 248 LSDTAVMDMMVSTLQQQRAVTEQLRR-EAAIKRIPVSVAVSDIIKYINEHEQED 90
           L   AV  +    L+++R  +++    E  I  +  ++A   +IKY  +HE  D
Sbjct: 440 LHQDAVDTVAAEFLEERRFESDEEEDVEPQISNVEAAMAFEVLIKYFEQHENGD 493


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 158 KRIPVSVAVSDIIKYINEH 102
           K++PVS  ++DI  ++N H
Sbjct: 42  KKVPVSKVLADITVFLNAH 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,288,703
Number of Sequences: 5004
Number of extensions: 20652
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)