Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E11
         (362 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0062 - 10233885-10234082,10235868-10236004,10236103-10236424     27   4.5  
07_01_1161 - 10991245-10991283,10991389-10991427,10991513-109917...    27   6.0  
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746...    26   7.9  

>10_06_0062 - 10233885-10234082,10235868-10236004,10236103-10236424
          Length = 218

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 243 GHSRNGYDGINVTAAAGCN*AAPQRSSNKENP 148
           GH R G+ G    AAA    AA  R  N  +P
Sbjct: 135 GHRRQGHRGGEAAAAAPAKVAAQSRQENPSSP 166


>07_01_1161 -
           10991245-10991283,10991389-10991427,10991513-10991738,
           10991902-10992054,10992133-10992638,10992651-10993019,
           10993107-10993553,10993752-10994339
          Length = 788

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 19/67 (28%), Positives = 37/67 (55%)
 Frame = +1

Query: 67  LENPTKRQSSCSCSLIYLMISETATDTGILFIAASLRSCSVTARCCCNVDTIISITAVSE 246
           LE+PT+++SSC+ +   L  + T+ D+ +  I     SC++T R      TI +   ++ 
Sbjct: 315 LESPTEKRSSCAST--ELAENPTSVDSAVDHITEP-TSCTLTVRVMPTF-TIPAAEGLAY 370

Query: 247 RPMLKTK 267
           +P  +T+
Sbjct: 371 KPTPETR 377


>02_03_0121 + 15468894-15468906,15469008-15469193,15474157-15474650,
            15475090-15475521,15475597-15475821,15476065-15476346,
            15476432-15476704,15477680-15477805,15481010-15481288,
            15481313-15481588,15481670-15482113,15482200-15482397,
            15482574-15482732,15482832-15483085,15483164-15483316,
            15483395-15483683,15483769-15483807,15483913-15483951
          Length = 1386

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 67   LENPTKRQSSCSCSLIYLMISETATDTGILFIAASLRSCSVTAR 198
            LE+PT+++SSC+ +   L  + T+ D+ +  I     SC++T R
Sbjct: 980  LESPTQKRSSCAST--ELAENPTSVDSAVDHITEP-TSCTLTVR 1020


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,250,653
Number of Sequences: 37544
Number of extensions: 134674
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)