Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E11
         (362 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67883-2|CAA91806.1|   62|Caenorhabditis elegans Hypothetical pr...    43   6e-05
AF291848-1|AAK55965.1|   62|Caenorhabditis elegans heterotrimeri...    43   6e-05
AF291849-1|AAK55966.1|   62|Caenorhabditis elegans heterotrimeri...    38   0.002
AF106590-1|AAC78236.1|   62|Caenorhabditis elegans G protein, ga...    38   0.002
AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a...    31   0.33 
AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal...    31   0.33 
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    27   3.0  
Z83223-6|CAB05719.1|  884|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z81538-6|CAB04387.1|  884|Caenorhabditis elegans Hypothetical pr...    27   4.0  
AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical ...    27   4.0  
AC006780-3|AAF60649.2|  425|Caenorhabditis elegans Hypothetical ...    27   4.0  
Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    27   5.3  
Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical p...    26   7.0  
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass...    26   9.3  

>Z67883-2|CAA91806.1|   62|Caenorhabditis elegans Hypothetical
           protein K02A4.2 protein.
          Length = 62

 Score = 43.2 bits (97), Expect = 6e-05
 Identities = 23/63 (36%), Positives = 38/63 (60%)
 Frame = -1

Query: 209 LQQQRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFREKSSC 30
           ++  +A TEQL  EA I+R  VS    +++ +  +++  D L+ G + Q  NPF+EK SC
Sbjct: 1   MENIKASTEQLCAEANIQRKKVSEVSKELLDFCEKNKTNDMLVSGPTDQH-NPFQEKKSC 59

Query: 29  TXL 21
           + L
Sbjct: 60  SVL 62


>AF291848-1|AAK55965.1|   62|Caenorhabditis elegans heterotrimeric G
           protein gammasubunit 1 protein.
          Length = 62

 Score = 43.2 bits (97), Expect = 6e-05
 Identities = 23/63 (36%), Positives = 38/63 (60%)
 Frame = -1

Query: 209 LQQQRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFREKSSC 30
           ++  +A TEQL  EA I+R  VS    +++ +  +++  D L+ G + Q  NPF+EK SC
Sbjct: 1   MENIKASTEQLCAEANIQRKKVSEVSKELLDFCEKNKTNDMLVSGPTDQH-NPFQEKKSC 59

Query: 29  TXL 21
           + L
Sbjct: 60  SVL 62


>AF291849-1|AAK55966.1|   62|Caenorhabditis elegans heterotrimeric G
           protein gammasubunit 2 protein.
          Length = 62

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 21/60 (35%), Positives = 35/60 (58%)
 Frame = -1

Query: 200 QRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFREKSSCTXL 21
           QR V + LR +  I+R P++V+ +++ ++    E     LV    +KVNP+ EKS C+ L
Sbjct: 7   QRTV-DSLRSQLNIERTPITVSAAELRRFTESQEDP---LVNPIDKKVNPWAEKSKCSML 62


>AF106590-1|AAC78236.1|   62|Caenorhabditis elegans G protein, gamma
           subunit protein 2 protein.
          Length = 62

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 21/60 (35%), Positives = 35/60 (58%)
 Frame = -1

Query: 200 QRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFREKSSCTXL 21
           QR V + LR +  I+R P++V+ +++ ++    E     LV    +KVNP+ EKS C+ L
Sbjct: 7   QRTV-DSLRSQLNIERTPITVSAAELRRFTESQEDP---LVNPIDKKVNPWAEKSKCSML 62


>AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a
           protein.
          Length = 658

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 169 SLRSCSVTARCC-CNVDTIISITAVSERPMLKTKAKLKD*NW-ASPCTRRESPE 324
           S+  CS    C  C++D   S  AV+ +  LKTK   K   W +S    R SPE
Sbjct: 475 SVARCSEQPSCALCSLDPYCSWNAVNSKCSLKTKTNEKSVGWISSSWAGRISPE 528


>AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal
           protein 20, isoform a protein.
          Length = 658

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 169 SLRSCSVTARCC-CNVDTIISITAVSERPMLKTKAKLKD*NW-ASPCTRRESPE 324
           S+  CS    C  C++D   S  AV+ +  LKTK   K   W +S    R SPE
Sbjct: 475 SVARCSEQPSCALCSLDPYCSWNAVNSKCSLKTKTNEKSVGWISSSWAGRISPE 528


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 270 CFCFQHRPLGHSRNGYDGINVTA 202
           CFCF H  + ++ +GY  +NV++
Sbjct: 488 CFCFGHSSICNTADGYFAMNVSS 510


>Z83223-6|CAB05719.1|  884|Caenorhabditis elegans Hypothetical
           protein E01G4.6 protein.
          Length = 884

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 178 SCSVTARCCCNVDTIISITAVSERPMLKTKA 270
           +CS+   CC +VDT  +  + S    L+T+A
Sbjct: 816 TCSIVRNCCASVDTCDNYISSSPVKKLETEA 846


>Z81538-6|CAB04387.1|  884|Caenorhabditis elegans Hypothetical
           protein E01G4.6 protein.
          Length = 884

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 178 SCSVTARCCCNVDTIISITAVSERPMLKTKA 270
           +CS+   CC +VDT  +  + S    L+T+A
Sbjct: 816 TCSIVRNCCASVDTCDNYISSSPVKKLETEA 846


>AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical
           protein T21D12.9a protein.
          Length = 881

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 112 IYLMISETATDTGILFIAASLRSCSVTARCCCNVDTIISITAV 240
           IYLM S +A    IL +  S+  C   A+C CN + + ++  V
Sbjct: 839 IYLMASCSAFGLMILGVITSI--CICIAKCSCNQNHVFNVLPV 879


>AC006780-3|AAF60649.2|  425|Caenorhabditis elegans Hypothetical
           protein Y47D9A.5 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -1

Query: 164 AIKRIPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFREK 39
           +I ++  ++ +  ++   N H   DC+L GF   ++N  + K
Sbjct: 111 SIYQLKNTINIDGVVDQSNPHINHDCILDGFERYRLNIAKRK 152


>Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 215 STLQQQRAVTEQLRRE-AAIKRIPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFRE 42
           ++L  Q A  E L    +    + ++VA   ++K+I       C+LVG + + V  F E
Sbjct: 57  NSLNLQNAANEVLHSIISCFMMVVLAVAAGKLVKFIYTPSLIGCMLVGIAMRNVPQFGE 115


>Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 215 STLQQQRAVTEQLRRE-AAIKRIPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFRE 42
           ++L  Q A  E L    +    + ++VA   ++K+I       C+LVG + + V  F E
Sbjct: 57  NSLNLQNAANEVLHSIISCFMMVVLAVAAGKLVKFIYTPSLIGCMLVGIAMRNVPQFGE 115


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
           protein precursor protein.
          Length = 2272

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -2

Query: 112 SMNTSKKIAFWLGFRVRK*IHSVKKVHVL 26
           SM+T++K  F  GF+VRK  H VKK  V+
Sbjct: 39  SMDTTEK-TFENGFQVRKAEHEVKKKDVI 66


>Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical
           protein C30H6.5 protein.
          Length = 527

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 218 VSTLQQQRAVTEQLRREAAIKRIPVSVAVSDII 120
           +ST QQ    T +LRR  A+K+ P+     ++I
Sbjct: 209 ISTTQQAIPTTNELRRVHAVKQYPLDPKNGNVI 241


>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 177 protein.
          Length = 1667

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = -1

Query: 233 VMDMMVSTLQQQRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQEDCLLVGF 72
           V D++ S L   R+  ++++  + + R P  +  SDI K I+ H+Q  C L+ +
Sbjct: 225 VSDIICSRLN--RSQWQRVKVASQLVRDPTILVCSDIFKDIDVHDQ--CFLIDY 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,158,639
Number of Sequences: 27780
Number of extensions: 119159
Number of successful extensions: 296
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)