Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_E09
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0673 + 24183512-24183514,24183625-24183694,24184203-241842... 71 9e-13
05_07_0205 - 28402436-28402505,28402604-28402681,28402789-284029... 63 2e-10
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023... 62 4e-10
11_04_0161 - 14270233-14271747 30 2.0
10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415,495... 29 4.5
03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849... 29 4.5
04_04_0495 - 25623562-25623775,25623902-25624004,25624129-256242... 28 6.0
01_05_0636 + 23852985-23853142,23853253-23853445,23853910-238540... 28 7.9
>01_05_0673 +
24183512-24183514,24183625-24183694,24184203-24184259,
24184348-24184465,24185044-24185133,24185209-24185388,
24185474-24185551,24185642-24185711
Length = 221
Score = 70.9 bits (166), Expect = 9e-13
Identities = 34/58 (58%), Positives = 41/58 (70%)
Frame = -2
Query: 684 KPFLWLARKLIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDEDL 511
KPFL+LARKL GDGNL FV PAL PP+VT+D Q Q E +L A LP++D+DL
Sbjct: 162 KPFLYLARKLAGDGNLHFVETPALAPPDVTIDLAAQQQHEAELAAAAAQPLPDDDDDL 219
>05_07_0205 -
28402436-28402505,28402604-28402681,28402789-28402968,
28403051-28403140,28403258-28403375,28403461-28403517,
28404155-28404224,28404317-28404319
Length = 221
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/58 (55%), Positives = 38/58 (65%)
Frame = -2
Query: 684 KPFLWLARKLIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDEDL 511
KPFL+LARKL GD NL FV AL PPEV +D Q Q E +L A LP++D+DL
Sbjct: 162 KPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDDL 219
>06_03_0668 +
23301578-23301791,23302102-23302199,23302233-23302301,
23302674-23302961,23303045-23303208,23303344-23303599,
23303706-23303816,23304109-23304195,23305916-23305985,
23306093-23306149,23306309-23306426,23307314-23307403,
23307492-23307671,23307816-23307893,23308016-23308088
Length = 650
Score = 62.1 bits (144), Expect = 4e-10
Identities = 32/57 (56%), Positives = 39/57 (68%)
Frame = -2
Query: 684 KPFLWLARKLIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDED 514
KPFL+LARKL GD NL FV ALLP +VT+D Q +IE ++ A LP+EDED
Sbjct: 590 KPFLYLARKLTGDMNLRFVEELALLPADVTIDLIAQQKIETEIAAAAAMPLPDEDED 646
>11_04_0161 - 14270233-14271747
Length = 504
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 684 KPFLWLARKLIGDGNLEFVAMPALLPPEVTMDPQWQNQ 571
+PFLW+ R+ DG A LLPP M +W +Q
Sbjct: 324 RPFLWVVRRDSRDGGGGGGAATGLLPPAGGMVVEWCSQ 361
>10_01_0003 +
46158-46428,46588-46706,46819-46928,48977-49415,
49511-49633,49805-50106,50143-50350,50729-51448
Length = 763
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 449 THLHDPPITKWALGTSVDHIYKSSSSSGRAVFCA-S*RSF-SIWFCH*GSIVTSGGRRAG 622
T + D ITK +G++ D +K +S G+A F A + SF IWF G + + A
Sbjct: 149 TLVKDHGITKLVMGSTPDTCFKLKASYGKASFMARNAPSFCEIWFVWRGRHIWTREAAAA 208
Query: 623 MATN 634
+ N
Sbjct: 209 IGNN 212
>03_05_1138 +
30684014-30684386,30684480-30684865,30684870-30684962,
30684963-30685108,30685211-30685454,30685562-30685666,
30685774-30685956,30686052-30686738
Length = 738
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 666 ARKLIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQD 550
A LIGDG+ + +A+ + +V DP+W E +D
Sbjct: 263 ASTLIGDGSGDLMALTLIKQQQVCRDPRWGRCYESYSED 301
>04_04_0495 -
25623562-25623775,25623902-25624004,25624129-25624231,
25624353-25624562
Length = 209
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 154 NNSDQIGINTYWAINAK-CFYDNCNKN 231
N D IGIN Y AI AK C Y C N
Sbjct: 22 NKVDFIGINQYTAIYAKDCIYSPCALN 48
>01_05_0636 +
23852985-23853142,23853253-23853445,23853910-23854033,
23854285-23854637,23855525-23856530,23856892-23857085,
23857238-23857324
Length = 704
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 587 GSIVTSGGRRAGMATNSRLPSPI 655
G +GGRR GM SRLPS +
Sbjct: 58 GKAAGAGGRRFGMVRGSRLPSQL 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,853,912
Number of Sequences: 37544
Number of extensions: 331880
Number of successful extensions: 644
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -