Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E08
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                      127   3e-30
08_02_1181 - 24985963-24986242,24987109-24987197                      124   3e-29
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649    105   1e-23
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   5.1  
03_02_0178 + 6195402-6199158,6199438-6200003                           27   6.7  
04_01_0359 + 4711289-4713052,4713423-4713950                           26   8.9  
01_03_0147 - 13125065-13126679,13126802-13127664                       26   8.9  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  127 bits (306), Expect = 3e-30
 Identities = 60/104 (57%), Positives = 76/104 (73%)
 Frame = -2

Query: 320 KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTR 141
           K +R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +
Sbjct: 4   KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK 63

Query: 140 LNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPV 9
           LNK +WS G+R+VP          RND+ED+  +L++LVT   V
Sbjct: 64  LNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEV 107


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  124 bits (298), Expect = 3e-29
 Identities = 60/103 (58%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
 Frame = -2

Query: 314 ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRL 138
           E+KG +A  E VVTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +L
Sbjct: 3   EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL 62

Query: 137 NKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPV 9
           NK +WS G+R+VP          RND+ED+  +L++LVT   V
Sbjct: 63  NKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEV 105


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score =  105 bits (252), Expect = 1e-23
 Identities = 55/110 (50%), Positives = 71/110 (64%), Gaps = 16/110 (14%)
 Frame = -2

Query: 290 NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAEKQMGTPD 159
           +EVVTREYT+NLHKRLHG                  FKK+AP AIKEIRKFA+K MGT D
Sbjct: 13  DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTD 72

Query: 158 IRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPV 9
           IR+D +LNK +W+ G+R+VP          RND+ED+  +L++LVT   +
Sbjct: 73  IRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEI 122


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 263 VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 159
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 350 TKLKITMAKPKGERKGKSAINEVVTREYTVNL 255
           T L + M KP  E KGK    +V+++E  + +
Sbjct: 704 TALNLIMGKPSAEDKGKGIAFDVLSKEEDIGV 735


>04_01_0359 + 4711289-4713052,4713423-4713950
          Length = 763

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 102 NISDSLRPKEFV*ASVYSNVRSSHLFFSELSDFFDCSW 215
           NI    R  +F+ A  Y ++    L+F+  SD F   W
Sbjct: 48  NILQCQRVSDFLIAMAYFSIPLELLYFATCSDLFPLKW 85


>01_03_0147 - 13125065-13126679,13126802-13127664
          Length = 825

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 103 TFLTPLDQRNLFKRVSTRMSGVPICFS 183
           ++LT L  RNL + +  R +G P C++
Sbjct: 481 SYLTDLISRNLIQALHLRHNGTPSCYT 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,338,980
Number of Sequences: 37544
Number of extensions: 167705
Number of successful extensions: 358
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)