Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E07
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    27   1.8  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   2.3  
SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...    25   9.3  

>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 202 KISPVYFRFSWFVCLYS 152
           +I P Y+ F WF CL S
Sbjct: 352 QIHPTYYSFRWFTCLLS 368


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -2

Query: 482 VDNTVLTNQEKPTNQLTRLRN 420
           VD TVL + +KP++QLT LR+
Sbjct: 186 VDLTVLVSVKKPSDQLTSLRS 206


>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 186 TLGSAGSCVSIVKHPVGTSVQPCAGLSFR 100
           T+   GSC S++  P G   +   G SFR
Sbjct: 52  TVVICGSCASVLCQPTGGKARLMEGCSFR 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,400
Number of Sequences: 5004
Number of extensions: 47251
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)