Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E07
         (645 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045250-1|AAC02700.1|  259|Anopheles gambiae serine proteinase ...    27   0.38 
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    25   2.0  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    25   2.0  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    23   6.3  

>AF045250-1|AAC02700.1|  259|Anopheles gambiae serine proteinase
           protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 0.38
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 487 WRRVSGCSVDRGNPPTLTGF*PRTDVGCKSAGE 585
           ++ V+GC+ D G P T+T    +  +G  S GE
Sbjct: 199 YKNVTGCTADSGGPLTVTIDGEQMQIGVLSYGE 231


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 126 QPCAGLSFR*TDILRSCEHVEFILEHNAIL 37
           QP    S   T++ RSC  V FI EH  +L
Sbjct: 458 QPAFSHSVCSTEVHRSCFCVRFIAEHTKML 487


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 126 QPCAGLSFR*TDILRSCEHVEFILEHNAIL 37
           QP    S   T++ RSC  V FI EH  +L
Sbjct: 458 QPAFSHSVCSTEVHRSCFCVRFIAEHTKML 487


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 563 TSVRGQNPVRVGGFPRSTLQPDTRRQGVDNTVLTNQEKPTNQLT 432
           TSV   +   VGG  +ST   D  +      +L+ Q++P + LT
Sbjct: 79  TSVNSASTGAVGGGHQSTDMVDYTQLQPQKFLLSQQQQPQSALT 122


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,110
Number of Sequences: 2352
Number of extensions: 12483
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63559560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)