Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E07
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -1

Query: 180 GSAGSCVSIVKHPVGTSVQPCAGLSFR*TDILRSCEHVEFILEHNAIL 37
           G AG  +  VK PV  S  P    S    +I +SC  V FI EH  +L
Sbjct: 457 GEAG--IEEVKSPVLRS-PPAFSHSRCPPEIHKSCICVRFIAEHTKML 501


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -1

Query: 180 GSAGSCVSIVKHPVGTSVQPCAGLSFR*TDILRSCEHVEFILEHNAIL 37
           G AG  +  VK PV  S  P    S    +I +SC  V FI EH  +L
Sbjct: 457 GEAG--IEEVKSPVLRS-PPAFSHSRCPPEIHKSCICVRFIAEHTKML 501


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 268 FKYIWLLNKL 297
           FKY W+L+KL
Sbjct: 54  FKYAWVLDKL 63


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 462 QPREANQSINPIEKHLSSYLRLHVLA 385
           +P+   QS+ P +  LS YLR   L+
Sbjct: 254 RPKMTPQSLLPSQTGLSPYLRFGCLS 279


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -2

Query: 590 NDSPALLHPTSVRGQNPVRVGGFPRSTLQPDTRRQGV 480
           N++   L   ++      +  G P STL    RR+G+
Sbjct: 471 NNALDALRTGTISANKASKAFGIPSSTLYKIARREGI 507


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 268 FKYIWLLNKL 297
           FKY W+L+KL
Sbjct: 54  FKYAWVLDKL 63


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 416 KCFSIGLIDWLASLGW 463
           +C + G   W+ S GW
Sbjct: 363 RCNATGAFSWIGSDGW 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,954
Number of Sequences: 438
Number of extensions: 3450
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)