Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E05
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   1.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   2.3  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.1  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 298 IIFYSRIFNIQQKKNMGLTSIMRKEQSVLTHIIYLIY 188
           + F   +F I    N GLT +  K Q+++ ++ YLIY
Sbjct: 412 VTFDVSVFEIFGNWNNGLTLVTSKRQNLIGNLEYLIY 448



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 309 SLNPYTLDLYEVLILICKVKFNKVINIFPTASV*LLRVEK-QIFFLVTVIRIYALNSTPN 485
           S N   L +  VL  IC+ +FN V++I   +S+  L ++   I + V  IR     + P+
Sbjct: 713 SFNQSELLVANVLHEICEKRFNSVVSISRFSSIFDLGLDSLDIVYFVRKIRSLGFEANPS 772

Query: 486 V 488
           +
Sbjct: 773 I 773


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -1

Query: 385  FITLLNLTLQIKMRTS*RSKVYGLREPLQIIFYSRIFN-IQQKKNMGLTSIMRKEQSVL 212
            F+T ++  LQ ++R+   S+  G++    +IF +R FN I+   +     I R+ +  L
Sbjct: 2291 FVTQISNALQAQLRSPVLSEELGMQVAKNLIFLTRWFNSIRSSDDSPFLEIFRRMRKTL 2349


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 705 ITVSLRCPEILASCKLAIIGLNDG 634
           +++S   P+ LA CK+++ GLN+G
Sbjct: 863 VSMSGHSPDFLAWCKISLKGLNEG 886


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 635  PSLRPIMASLHEASISGQRSDTVIQRLK 718
            P+L P  +SL  +S+S QRS T I  +K
Sbjct: 975  PALSPAPSSLARSSVSSQRSSTSIIPIK 1002


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,939
Number of Sequences: 5004
Number of extensions: 55986
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)