Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E04
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   7.3  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   7.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   9.6  

>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 128 CFFNFNVQSWLLIFMCLLIK 69
           CF N NV+ W L+ +  L+K
Sbjct: 10  CFINVNVKLWFLVRVYRLVK 29


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 497 YFYCM*KSTI*LNNENLNLKYCKHSIFLLNIALIQFD 387
           YF    + T+ L +EN N  + K  I  +N+  ++FD
Sbjct: 419 YFQASCRHTLNLLDENANYNFSKIFITHVNVPALEFD 455


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 271  YLLVCIFMFLAICNISNPLCEN 206
            YLLVC+ M L +    N  CE+
Sbjct: 1225 YLLVCLRMLLEVAKNVNTYCES 1246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,695
Number of Sequences: 5004
Number of extensions: 40750
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)