Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E04
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296...    28   5.7  
01_01_1114 - 8820996-8821538,8826753-8827178                           28   5.7  

>03_01_0382 +
           2961665-2961672,2962504-2962557,2962935-2963004,
           2963141-2963386,2967246-2967491,2968837-2968888,
           2969270-2969651,2970527-2970681,2971389-2971713,
           2975803-2975871,2976189-2976346,2976444-2976551,
           2976659-2977131
          Length = 781

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 325 YNLMPYDSPYFVVNLVTLYLLVCIFMFLAICNISNP-LCENCI 200
           YN+M   + +  ++ + LYLL C+ +F   C++  P LC+ C+
Sbjct: 41  YNIM---ASFLAIHEIDLYLLACLAIFQR-CSLCVPKLCDICV 79


>01_01_1114 - 8820996-8821538,8826753-8827178
          Length = 322

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 638 VSAXDDSLCCRSMLFSNLSNLHTSVGIHLVCRHVNVPCSRVCFCNLI 498
           V A D+SL    +  SNL  L  S+ + ++C + N P S   F +++
Sbjct: 20  VQASDESLRPHVLAVSNLDLLPQSIQVSMICIYPNPPTSAGGFHDVV 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,499,154
Number of Sequences: 37544
Number of extensions: 205099
Number of successful extensions: 326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)