Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E04
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.84 
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    23   2.6  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   3.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.9  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 301 PYFVVNLVTLYLLVCI 254
           P+F VN+VT Y   CI
Sbjct: 287 PFFCVNIVTSYCKTCI 302


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 202 IRITVIILLYYTALNKIKS 146
           +RIT++ILL +T L  + S
Sbjct: 1   MRITILILLVFTVLATVSS 19


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 214 CENCIRITVIILLYYTALNKIKSNM*IKTVFLTLMFKVGF*S-LCVC 77
           C NCI  TV  +L++        N  I  +F +  F+  F S +C C
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIYALF-SKDFRFAFKSIICKC 80


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 214 CENCIRITVIILLYYTALNKIKSNM*IKTVFLTLMFKVGF*S-LCVC 77
           C NCI  TV  +L++        N  I  +F +  F+  F S +C C
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIYALF-SKDFRFAFKSIICKC 528


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 610 VGVCYFLIYQTYILRLEYIW 551
           + +CY++IY TY  + E+ W
Sbjct: 483 LNICYWVIYVTY--QEEFKW 500


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,619
Number of Sequences: 438
Number of extensions: 2593
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)