Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_E03
(574 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 81 1e-16
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 0.84
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 26 3.4
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom... 26 4.5
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 26 4.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 6.0
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 80.6 bits (190), Expect = 1e-16
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = -2
Query: 237 HCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 73
HC+QSY+D+ RC K +GE + PC F Y+SLCP EWV++WD QR GTF I
Sbjct: 29 HCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFPAPI 83
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 0.84
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -3
Query: 236 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 78
T++ V TST A NT+ + S S P++ ST TS P S V
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2405
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -3
Query: 236 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 78
T++ V TST A NT+ S S P++ ST TS P S V
Sbjct: 1117 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 1169
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -3
Query: 236 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 78
T++ V TST A NT+ S S P++ ST TS P S V
Sbjct: 2761 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2813
Score = 26.6 bits (56), Expect = 2.6
Identities = 25/98 (25%), Positives = 37/98 (37%)
Frame = -3
Query: 371 VENVSTIVSELRQLCTSLQVLSIVIIIKLQQWDKIYFITLHTGYCTATKVTWTSTVARKF 192
V N ST ++ L +S + S ++ + T ++T V TST
Sbjct: 1445 VVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVVN-TSTPITSS 1503
Query: 191 AAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 78
NT+ S S P++ ST TS P S V
Sbjct: 1504 TVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1541
Score = 25.8 bits (54), Expect = 4.5
Identities = 24/96 (25%), Positives = 36/96 (37%)
Frame = -3
Query: 365 NVSTIVSELRQLCTSLQVLSIVIIIKLQQWDKIYFITLHTGYCTATKVTWTSTVARKFAA 186
N ST ++ L +S + S ++ + T ++T V TST
Sbjct: 1135 NTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVVN-TSTPITSSTV 1193
Query: 185 KNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 78
NT+ S S P++ ST TS P S V
Sbjct: 1194 VNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1229
Score = 25.0 bits (52), Expect = 7.9
Identities = 25/98 (25%), Positives = 37/98 (37%)
Frame = -3
Query: 371 VENVSTIVSELRQLCTSLQVLSIVIIIKLQQWDKIYFITLHTGYCTATKVTWTSTVARKF 192
V N ST ++ L TS + S ++ + T ++T V TST
Sbjct: 2153 VLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTVVN-TSTPITSS 2211
Query: 191 AAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 78
NT+ S S P++ ST +S P S V
Sbjct: 2212 TVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 2249
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 151 HSLEIVAWFVFFAANFLATVEVHVTLVAVQYPVCS 255
H L + F FF L T + V+++ V + +CS
Sbjct: 515 HPLYFMFGFSFFCFGILVTTCIMVSIITVYFQLCS 549
>SPAC1527.02 |sft2||Golgi transport protein Sft2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 4.5
Identities = 7/35 (20%), Positives = 23/35 (65%)
Frame = +1
Query: 166 VAWFVFFAANFLATVEVHVTLVAVQYPVCSVIKYI 270
+++FV A +AT+++ T++++ + V ++ ++
Sbjct: 137 LSYFVTLLATIIATIKIKSTILSIVFGVLHILSFV 171
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 299 SQLIRLVGLCTVGAVRLQLSIRFQQTTDKQFLHYLV*FW 415
S L+G +G + + +S+ + + FLHYLV W
Sbjct: 148 SDFEELLGNMRIGLI-IDISLLGMNSNESSFLHYLVEVW 185
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 364 FSTNHRQTILTLPRLILVREPWVERCCFEVGGRFDHLRHIAYYYLAVSW 510
+ T++ ++ LI +R P+V+ GG+FDH + +Y + +W
Sbjct: 2011 YGTHYSSAMIVCSYLIRLR-PFVDSYLALQGGQFDHADRL-FYSIEQAW 2057
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,719
Number of Sequences: 5004
Number of extensions: 52642
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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