Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_E03
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 75 4e-14
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 75 5e-14
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911 58 4e-09
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832... 54 8e-08
09_06_0272 - 21962495-21962524,21962742-21962918 31 0.86
05_05_0223 - 23406814-23407477,23407597-23407919 31 0.86
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 28 4.6
04_04_0692 - 27307349-27307728,27308381-27308546 28 6.1
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905... 28 6.1
11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152 27 8.0
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 74.9 bits (176), Expect = 4e-14
Identities = 28/61 (45%), Positives = 38/61 (62%)
Frame = -2
Query: 261 YNTAHWILHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFA 82
+ T + HC+ YV++HRC +GE C F + YRSLCP EWV++W+ QR GTF
Sbjct: 107 FPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEWVERWNEQRENGTFP 166
Query: 81 G 79
G
Sbjct: 167 G 167
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 465 KSPADLKTAPFDPRFPNQNQTR*C 394
K ++TAP D RFP NQTR C
Sbjct: 93 KPEIKIETAPADFRFPTTNQTRHC 116
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 74.5 bits (175), Expect = 5e-14
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2
Query: 261 YNTAHWILHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFA 82
+ T + HC+ Y+++HRC +GE C F + YRSLCP+EW+++W+ QR GTF
Sbjct: 193 FPTTNQTRHCFTRYIEYHRCVAAKGEGAPECEKFAKYYRSLCPSEWIERWNEQRENGTFP 252
Query: 81 G 79
G
Sbjct: 253 G 253
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 465 KSPADLKTAPFDPRFPNQNQTR*C 394
K ++TAP D RFP NQTR C
Sbjct: 179 KPEIKIETAPADFRFPTTNQTRHC 202
>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
Length = 51
Score = 58.4 bits (135), Expect = 4e-09
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = -2
Query: 204 CQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAG 79
C + +GE + C + + YRSLCP EW+++W QRA GTFAG
Sbjct: 8 CIEAKGEGSDECTKYAKCYRSLCPGEWIERWKEQRANGTFAG 49
>04_04_0390 -
24882572-24882577,24882928-24883009,24883089-24883200,
24883411-24883441
Length = 76
Score = 54.0 bits (124), Expect = 8e-08
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -2
Query: 261 YNTAHWILHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 124
+ T + HC+ Y+++HRC +GE C F + YRSLCP EW
Sbjct: 30 FPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEW 75
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 453 DLKTAPFDPRFPNQNQTR*C 394
++KTAP D RFP NQTR C
Sbjct: 20 EIKTAPADFRFPTTNQTRHC 39
>09_06_0272 - 21962495-21962524,21962742-21962918
Length = 68
Score = 30.7 bits (66), Expect = 0.86
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 66 GSKSYRRRCLRRAGCPTCRPTHWGRET 146
G +R++ G P CRP HW R T
Sbjct: 11 GGGDFRQKVWSMTGGPYCRPVHWRRNT 37
>05_05_0223 - 23406814-23407477,23407597-23407919
Length = 328
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 194 FAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPS 84
FA+ N A++S C+G A + TS +S P+AP+
Sbjct: 219 FASSNGGDASVSWPCSGDDAQNNSETSHESSPPEAPA 255
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -2
Query: 165 YFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI*ILNVPD 52
+F R ++ L PNEW++ ++ + +G + L++ D
Sbjct: 879 HFLRGFQQLIPNEWINMFNEHEFQVLISGSLESLDIDD 916
>04_04_0692 - 27307349-27307728,27308381-27308546
Length = 181
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -3
Query: 230 TKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPS 84
T VT T + R F +T H + T A +SGS +G T K S
Sbjct: 91 TIVTLTRSGTRYFICGSTGHCGAGMKLTVTVATLSGSAAGGTRLAKPSS 139
>04_04_0293 -
24189344-24189350,24189804-24190026,24190411-24190529,
24191331-24191578
Length = 198
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 191 AAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 78
A K T A + + T +AP S + S +P+APSPV
Sbjct: 39 APKATAPAGPAPKATATAAPSSKAPSPAAPSPEAPSPV 76
>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
Length = 1044
Score = 27.5 bits (58), Expect = 8.0
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Frame = -3
Query: 341 LRQLCTSLQVLSIVIIIKLQQWDKIYFITLHTGYCTATKVTWTSTVA----RKFAAKNTN 174
L+ LC L LS IK++ + + +TLH+G AT+ W R +
Sbjct: 890 LQLLCKDLHGLSD---IKIECFKHLQEVTLHSGVTPATRQEWVKAAKEHPNRPKVLLLKS 946
Query: 173 HATISRECTGLSAPMSGSTSGTTS---APKAPSPV 78
T E T + + M S TT AP+ P V
Sbjct: 947 VDTAESEHTDVDSVMEAVKSETTEYSIAPEGPEQV 981
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,864,106
Number of Sequences: 37544
Number of extensions: 338756
Number of successful extensions: 1101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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