Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E03
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical...    71   6e-13
AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine re...    35   0.047
U97403-1|AAB52468.1|  237|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U39999-8|AAY44011.1|  146|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U23449-4|AAC24299.2|  534|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U39999-7|AAY44012.1|  232|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z83216-4|CAB62781.1|  314|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF098995-5|AAC67482.1|  477|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z66495-4|CAA91271.1|  954|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL117195-5|CAB55012.1|  732|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical p...    27   9.5  
AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical...    27   9.5  
AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear recep...    27   9.5  
AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear recep...    27   9.5  
AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear recep...    27   9.5  
AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    27   9.5  
AF039718-4|AAP68906.2|  696|Caenorhabditis elegans Prion-like-(q...    27   9.5  

>AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.5 protein.
          Length = 121

 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 23/53 (43%), Positives = 35/53 (66%)
 Frame = -2

Query: 234 CYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGR 76
           C+  YVDFHRC ++ G+ Y+PC +F+ VY+  CP  W ++WD   +EG F  +
Sbjct: 66  CFAYYVDFHRCNELMGQDYKPCKFFQNVYKDFCPGFWTERWDELLSEGRFPAK 118


>AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine
           receptor, class t protein65 protein.
          Length = 354

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 368 ENVSTIVSELRQLCTSLQVLSIVIIIKLQQWDKIYFITLH 249
           + +S     L Q+C ++++L I I+ K   WD +Y I LH
Sbjct: 9   DTISQFNPSLLQICRNVKILCIKILCKFITWDFLYLIKLH 48


>U97403-1|AAB52468.1|  237|Caenorhabditis elegans Hypothetical
           protein T10E9.5 protein.
          Length = 237

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 458 PPTSKQHLSTHGSLTKIRRGNVRIVCLWFVENVSTIVSELRQLCTSLQVLSI 303
           PP  K HL ++      ++ N R++   F ENVST+V + RQ    ++V  I
Sbjct: 176 PP--KIHLVSNNERNDEKKNNPRLLVYTF-ENVSTVVHDFRQAVKMIKVTGI 224


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 267  IFYNTAHWILHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNE 127
            +F NT HW L  Y+  +D H  Q++    ++  +Y K +  +  P +
Sbjct: 4828 VFNNTLHWALDSYRDEIDRHESQQM---SFKNIFYEKVLLETPMPQQ 4871


>U39999-8|AAY44011.1|  146|Caenorhabditis elegans Hypothetical
           protein F41G3.19 protein.
          Length = 146

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -3

Query: 245 GYCTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGF 72
           GYCT++  T ++T +       TN +T   +CT +++  + S   T    + P   G+
Sbjct: 85  GYCTSSSSTSSTTSSSSTCVDLTNASTGVSDCTRMASYCTNSIYLTLMKQQCPKTCGY 142


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -3

Query: 230  TKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVG 75
            T  T +ST+     + +T H T+S+  +G ++P + S +G+T    + S  G
Sbjct: 1426 TGSTESSTLLSSTISGSTQHTTMSKASSGSTSPSTNSQTGSTVTMGSSSTSG 1477


>U23449-4|AAC24299.2|  534|Caenorhabditis elegans Hypothetical
           protein K06A1.5 protein.
          Length = 534

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
 Frame = +3

Query: 60  RLGSKSYRRRCLRRAGCPTCRPTHWG--RETCTLS*NSSMV---RIFRRELSGNGGSPRN 224
           RL   S R  CL  +   TCR  +    R   T S ++  V   R+F+     +G + R 
Sbjct: 295 RLDYDSQRHVCLASSNDKTCRLWNIDSQRLLSTFSGHTDKVSSARLFQSHNVISGSADRT 354

Query: 225 FGSSAISSVQCYKIYFIPLLKFD 293
             +  ISS++C K Y +    FD
Sbjct: 355 IKNWDISSIRCLKSYLVGSTVFD 377


>U39999-7|AAY44012.1|  232|Caenorhabditis elegans Hypothetical
           protein F41G3.20 protein.
          Length = 232

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 245 GYCTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGF 72
           GYCT++  T TS+ +       TN +T   +C G+++  + S   T    + P   G+
Sbjct: 122 GYCTSSSATTTSSSST--CIDLTNASTGVSDCPGMASYCTNSAYLTLMKQQCPKTCGY 177


>Z83216-4|CAB62781.1|  314|Caenorhabditis elegans Hypothetical
           protein C08F11.5 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 296 IIKLQQWDKIYFITLHTGYCTATKV 222
           ++KL+QW K  FI ++ GY    KV
Sbjct: 198 LVKLEQWKKAKFIEIYGGYTFPFKV 222


>AF098995-5|AAC67482.1|  477|Caenorhabditis elegans Hypothetical
           protein F58E1.4 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
 Frame = -3

Query: 269 IYFITLHTGYCTATKVTWTSTVARKF----AAKNTNHATISRECTGLSAPM 129
           +YF  LH  YC   K  +  T+  K+        T   T+   CT +S  +
Sbjct: 306 VYFKNLHATYCEGEKEQFVETLLEKYEICWLTTTTTLKTLKSNCTVISGDL 356


>Z66495-4|CAA91271.1|  954|Caenorhabditis elegans Hypothetical
           protein C36A4.5 protein.
          Length = 954

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 227 KVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFR 69
           K      +A+K  A     A  S+  + +SAP + + + T+SAP A +P   R
Sbjct: 409 KAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAP-ATAPEASR 460


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -3

Query: 230 TKVTWTSTVARKFAAKNTNHATISRE---CTGLSAPMSGSTSGTTSAPKAPS 84
           TKVT TST         T  AT + E    T   AP + +T  TT+  + P+
Sbjct: 310 TKVTPTSTTTEIPTTTTTEEATTTTEEITTTTTKAPTTTTTQSTTTTTQLPT 361


>AL117195-5|CAB55012.1|  732|Caenorhabditis elegans Hypothetical
           protein Y57A10A.7 protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 213 FHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDN 106
           F+R  ++ G      YY+ R +  + PN  + KWDN
Sbjct: 29  FNRFAELDGAGLSHIYYYIRFHEHIAPN--IAKWDN 62


>Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 252 AHWILHCYQSYVDFHRCQKV 193
           A WIL+ Y  + D H+ QK+
Sbjct: 186 ADWILNSYPGFADLHKDQKI 205


>AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 252 AHWILHCYQSYVDFHRCQKV 193
           A WIL+ Y  + D H+ QK+
Sbjct: 186 ADWILNSYPGFADLHKDQKI 205


>AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 388

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 252 AHWILHCYQSYVDFHRCQKV 193
           A WIL+ Y  + D H+ QK+
Sbjct: 185 ADWILNSYPGFADLHKDQKI 204


>AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 387

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 252 AHWILHCYQSYVDFHRCQKV 193
           A WIL+ Y  + D H+ QK+
Sbjct: 184 ADWILNSYPGFADLHKDQKI 203


>AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 252 AHWILHCYQSYVDFHRCQKV 193
           A WIL+ Y  + D H+ QK+
Sbjct: 180 ADWILNSYPGFADLHKDQKI 199


>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = -3

Query: 185 KNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFRS*TFPML 48
           +  +H+ + ++   +          ++ AP APSP  F    FP L
Sbjct: 699 ETNHHSAVEKDAEKIKVRSPPVVVASSPAPAAPSPFSFEETAFPSL 744


>AF039718-4|AAP68906.2|  696|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform b protein.
          Length = 696

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = -3

Query: 185 KNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFRS*TFPML 48
           +  +H+ + ++   +          ++ AP APSP  F    FP L
Sbjct: 601 ETNHHSAVEKDAEKIKVRSPPVVVASSPAPAAPSPFSFEETAFPSL 646


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,790,996
Number of Sequences: 27780
Number of extensions: 304398
Number of successful extensions: 887
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)