Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_E02
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z83122-1|CAB05597.1|  293|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 145 HRGRRTSTVREPQEPHFRYRRSSIQQIPGLFCHQKFQSQSRNPQGRY 285
           HR R  S  +     + R R  S  + P     ++  S+SR+P+ RY
Sbjct: 3   HRSRSNSRSQSRSRENSRGRSRSASKSPVYHRRERESSRSRSPRARY 49


>Z83122-1|CAB05597.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A5.2 protein.
          Length = 293

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 88  LRRDGNHFRQRCTSSRGPFHRGRRTSTVREPQEPHFRYRRSSI 216
           LRR+ +H  ++C S R    +  + + V E  E +  Y  S +
Sbjct: 87  LRRENSHLHEQCESQRERIRKLEQRNDVLETSERNKEYLASDL 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,762,836
Number of Sequences: 27780
Number of extensions: 174870
Number of successful extensions: 561
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)