Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D23
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   1.0  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    27   1.8  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    25   4.2  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   5.6  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   7.3  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    25   7.3  
SPAC1556.06.2 |meu2|SPAC1556.06b, SPAC1556.06|sequence orphan|Sc...    25   7.3  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   7.3  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    24   9.7  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -3

Query: 294 EQCDFAQFWNRVHQMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLANLLGGIDDVT 115
           E  D    W R+ +  E   + + FH+   + +   +       D+  L  L+GGI ++ 
Sbjct: 600 EYVDLVTVW-RIQKRIE--EQFNAFHEGFSELIPQEL---INVFDERELELLIGGISEID 653

Query: 114 LKHWVKKYGWR 82
           ++ W K   +R
Sbjct: 654 MEDWKKHTDYR 664


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 297 LEQCDFAQFWNRVHQMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLAN 142
           LE C+F   W  + + P+LCS +  + D I   +  + G+ +  +D   L N
Sbjct: 278 LEACEF---WLAIAEQPDLCSALGPYLDKIVPML--LQGMVYSDMDLLLLGN 324


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 47  LVLAMKLXLPSSLHPYFLTQCFNVTSSIPPNRFARL 154
           L++  +  +P     Y L + F+  SSI  N  ARL
Sbjct: 140 LLIVNEKIIPQKTQKYLLYELFSSPSSITANEIARL 175


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = -1

Query: 356 FLNPWWKMRQFLKSNT*PTFWSNV-TLLSFGIEYT----KCQSCAVVSVASMTQSESLSV 192
           F+  W  MR +L        W  + T+ SF +++     KC     V++  +T  + +++
Sbjct: 283 FVFVWIYMRHYLNFKIMWAVWGTMRTINSFDLDWAAEQYKCWISRDVTLILLTALQLVNI 342

Query: 191 MWLVSHFRL 165
            WL+   R+
Sbjct: 343 YWLILILRI 351


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 246 ELCSRISGFHDSIRKFVCHVVGITFQT 166
           E CS+  G+H++  K  C +V  +  T
Sbjct: 212 EYCSKHPGYHEAASKSTCLIVDRSLDT 238


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 299 FWSNVTLLSFGIEYTKCQS 243
           FW N +LL   +EYT C +
Sbjct: 205 FWRNDSLLQILMEYTDCSN 223


>SPAC1556.06.2 |meu2|SPAC1556.06b, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 99

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 335 FSTTDSRSKHLHNV 376
           + TTD RSKHL N+
Sbjct: 73  YETTDKRSKHLKNM 86


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 335 FSTTDSRSKHLHNV 376
           + TTD RSKHL N+
Sbjct: 750 YETTDKRSKHLKNM 763


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 151 VVFVNSLKCDTNHMTDKLSD*VMEATDTTAQ--LWHLVYSIPKLSKV 285
           V+F N+  C T     +L    + A DT  Q    H+V S    SKV
Sbjct: 289 VIFTNNYDCQTFGQVLELLQSTIYAVDTNGQSIFHHIVQSTSTPSKV 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,867
Number of Sequences: 5004
Number of extensions: 39774
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)