Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D23
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81592-10|CAB04732.1|  240|Caenorhabditis elegans Hypothetical p...    84   4e-17
AY731377-1|AAW63419.1|  240|Caenorhabditis elegans eukaryotic in...    84   4e-17
Z29117-13|CAA82377.2|  435|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z70683-6|CAA94591.2|  512|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      27   5.0  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    27   5.0  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    27   5.0  
U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF016448-17|AAB65962.1|  656|Caenorhabditis elegans Hypothetical...    27   6.6  
Z71266-6|CAA95844.1|  184|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z81592-10|CAB04732.1|  240|Caenorhabditis elegans Hypothetical
           protein T16G1.11 protein.
          Length = 240

 Score = 84.2 bits (199), Expect = 4e-17
 Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 19/142 (13%)
 Frame = -3

Query: 420 QILLKALTNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVH----- 256
           Q+LLK L   P +DF L KCL+  + + ++ + +I  L  +LE C+FA FW  V      
Sbjct: 67  QVLLKTLMVLPSSDFALAKCLIDTNRLGSQELRRIFDLGAVLESCNFAVFWKLVKGAYKP 126

Query: 255 ------------QMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLANLLGGIDDVTL 112
                       ++P++   + GF D+++ + C V+ +TFQ I+K  L+ LLGG  D  +
Sbjct: 127 TTNPNEPFKVPGEVPKMIKPMVGFEDAVKHYACRVISVTFQKIEKKMLSRLLGGASDKEV 186

Query: 111 KHWVKKYGW--RDDGRXSFIAN 52
               + +GW  +++G   F+AN
Sbjct: 187 TALAQSFGWEAKENGDVFFVAN 208


>AY731377-1|AAW63419.1|  240|Caenorhabditis elegans eukaryotic
           initiation factor eIF-3.K protein.
          Length = 240

 Score = 84.2 bits (199), Expect = 4e-17
 Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 19/142 (13%)
 Frame = -3

Query: 420 QILLKALTNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVH----- 256
           Q+LLK L   P +DF L KCL+  + + ++ + +I  L  +LE C+FA FW  V      
Sbjct: 67  QVLLKTLMVLPSSDFALAKCLIDTNRLGSQELRRIFDLGAVLESCNFAVFWKLVKGAYKP 126

Query: 255 ------------QMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLANLLGGIDDVTL 112
                       ++P++   + GF D+++ + C V+ +TFQ I+K  L+ LLGG  D  +
Sbjct: 127 TTNPNEPFKVPGEVPKMIKPMVGFEDAVKHYACRVISVTFQKIEKKMLSRLLGGASDKEV 186

Query: 111 KHWVKKYGW--RDDGRXSFIAN 52
               + +GW  +++G   F+AN
Sbjct: 187 TALAQSFGWEAKENGDVFFVAN 208


>Z29117-13|CAA82377.2|  435|Caenorhabditis elegans Hypothetical
           protein C48B4.2 protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 10  IFSVIFL-VLXFSSCISNEAXPTVIPPSILL 99
           IF V +  VL  S+ +SN   PT  PPSIL+
Sbjct: 385 IFHVSYSHVLLISNAVSNSLYPTTSPPSILI 415


>Z70683-6|CAA94591.2|  512|Caenorhabditis elegans Hypothetical
           protein F13B12.2 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = -3

Query: 357 LLESVVENETISQIKYLADILEQCD---FAQFWNRVHQMPELCSRISGF-HDSIRK 202
           LL+     E I  IK+  DI +  +     ++W+ V +MPE  S  S F + SIR+
Sbjct: 233 LLQMGRYTEAIESIKFYYDIEDSDEDEIIKEYWDMVPEMPEQLSLCSAFSNSSIRR 288


>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical
           protein C45G3.1 protein.
          Length = 1186

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 92  YFLTQCFNVTSSIPPNRFARLFLSIV*NVIPTT*QTNFLIE 214
           YF+ Q     SSIP NR    F + V   +P T + N L E
Sbjct: 581 YFIVQQLLADSSIPRNRSVSPFSNNVTFTVPRTPRNNILTE 621


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 387 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 286
           H  FT  C  L +   ++NET + + YL  +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 387 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 286
           H  FT  C  L +   ++NET + + YL  +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 387 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 286
           H  FT  C  L +   ++NET + + YL  +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 387 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 286
           H  FT  C  L +   ++NET + + YL  +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 387 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 286
           H  FT  C  L +   ++NET + + YL  +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339


>U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical
           protein K03C7.3 protein.
          Length = 191

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 77  SSLHPYFLTQCFNVTSSIPPNRF 145
           S++H YF   C N T+  PPN F
Sbjct: 64  STMHTYFSFLCTNSTNISPPNVF 86


>AF016448-17|AAB65962.1|  656|Caenorhabditis elegans Hypothetical
           protein F41E6.14 protein.
          Length = 656

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = -3

Query: 396 NFPHTDFTLCKCLLLESVVENETISQIKYLAD-ILEQCDFAQFWNRVHQMPELCSRISGF 220
           NF  T FT+  CL +   +EN     +K L++ ++E  +F   +N+ + +  +      F
Sbjct: 351 NFTITAFTIGMCLAMIPWIENNQCLAMKTLSNPLIENAEFN--FNKSNTIIPISDLGCDF 408

Query: 219 HDSIRKFVCHVVGITFQTIDKNNLANLL 136
           +++  K   +  GI + +   N    ++
Sbjct: 409 NETTAKLPLNTFGIEYCSKKGNGTGTIM 436


>Z71266-6|CAA95844.1|  184|Caenorhabditis elegans Hypothetical
           protein R06C7.6 protein.
          Length = 184

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 324 SQIKYLADILE-QCDFAQFWNRVHQMPELCSRISGFHDSIR 205
           S++  L   LE  CDF ++W +   + E+  R + F    R
Sbjct: 74  SKVYDLDSTLEWSCDFLEYWEKTMNLAEMAQRDTKFRRKFR 114


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 339  ENETISQIKYLADILEQCD 283
            E++ + QI+ L D+L+QCD
Sbjct: 3505 EDKALDQIQVLVDVLKQCD 3523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,577,773
Number of Sequences: 27780
Number of extensions: 221433
Number of successful extensions: 466
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)