Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D18
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    28   1.3  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   3.1  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    27   3.1  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.0  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   7.1  
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...    25   7.1  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.1  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 390  YKYGCPTFAVTWLPLCCPFNYSPLYISS 307
            +++ CP F   W+P+   F+  PL +SS
Sbjct: 965  FEHVCPMFEAVWMPILAAFS-EPLQLSS 991


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = -3

Query: 260 KLIRYLETPSSVSVNP 213
           +L+++LE+PSS SVNP
Sbjct: 319 RLLKHLESPSSSSVNP 334


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 555 QITNIFQCYTKYFDSIGRLMCMH 623
           Q  +I+  +TKY + IG L C+H
Sbjct: 143 QHDDIWDMFTKYAEDIGGLFCIH 165


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 496 MDVTQNKNDTISVLFIKNVYKSQIFSNAIQNILIPLAV*C 615
           M + + KN    ++ IK+  K   FSNAI+ +L+P +  C
Sbjct: 1   MWILEKKNIFFKIIHIKSSRKFD-FSNAIRIVLLPFSSNC 39


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 145 VLCTYMSKLYHKSVKDELFIKGF 213
           V+ T +  + HK +KD+LF  GF
Sbjct: 84  VVSTLIDPVVHKDLKDKLFYVGF 106


>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 188 LTDL*YNLLMYVHNTYNMLKKHAPTADCCAIETCKSLRQK 69
           LT L      +  NT  +  +       CA+  C+SLR K
Sbjct: 71  LTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYK 110


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 457 HINTNLHNLKGNGMDVTQNKNDTISVLFIKNVYKSQIFSNAIQNIL-IPLAV*CV 618
           H+  +LHN   N   + + +  T++ LFI  +++    S  + + L + L   C+
Sbjct: 254 HMLVSLHNQVTNTSHLEKQRISTVATLFISKLFEIPSLSEYLSSTLFLDLQAFCI 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,552
Number of Sequences: 5004
Number of extensions: 53413
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)