Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D17
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0098 - 12844631-12845074,12845329-12846570                      184   5e-47
05_03_0557 - 15441039-15442730                                         30   2.3  
11_06_0364 - 22727978-22729149,22730475-22730727,22731628-227319...    29   4.0  
11_06_0361 - 22711200-22712180,22712523-22712729,22715205-227159...    29   4.0  
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875...    28   7.1  
02_02_0139 + 7122880-7122979,7123328-7123560,7123961-7124032,712...    28   7.1  

>10_07_0098 - 12844631-12845074,12845329-12846570
          Length = 561

 Score =  184 bits (449), Expect = 5e-47
 Identities = 96/239 (40%), Positives = 140/239 (58%), Gaps = 19/239 (7%)
 Frame = -1

Query: 760 GVXMLGDMV--DEVGRDG-KLNPIGVWHAEWXFKQVEKHLKRKRTAIEYIPLRDYYHRHT 590
           GV M G     +E  + G K+N +G W   W ++  +  LK K   +EYIP R+YYHRHT
Sbjct: 282 GVMMTGVYASKEEAKKKGNKINCVGWWFKPWFYQHAQTALK-KGEFVEYIPTREYYHRHT 340

Query: 589 RSLFWELQDIISFGNNFIFRYLFGWLMPPEVSLLKLTQPEAVTKLYNKAHVIQDMLIPIE 410
           R L+WE + I+ FG+ F FR+L GWLMPP+VSLLK TQ E++   Y+  HVIQDML+P+ 
Sbjct: 341 RCLYWEGKLILPFGDQFWFRFLLGWLMPPKVSLLKATQGESIRNYYHDNHVIQDMLVPLY 400

Query: 409 LLEKAIAFFHDEFEVYPIWLCPFKIFNNPGQLKI--KPGEE----------SQMFVDIGV 266
            +  A+ F H E EVYP+WLCP +++  P +  +  +PG E          +QMF D+GV
Sbjct: 401 KVGDALEFVHKEMEVYPLWLCPHRLYKLPVKTMVYPEPGFEHHHRQGDTSYAQMFTDVGV 460

Query: 265 YGVP----KAKGFETIASTRHVESFVIQNQGFQMLYADTYTTREEFRQMFDHKLYDRVR 101
           Y  P    + + F    +   +E ++I+N  +Q  YA +    ++F +MFD   Y+  R
Sbjct: 461 YYAPGAVLRGEEFNGALAVHRLEQWLIENHSYQPQYAVSELNEKDFWRMFDASHYEHCR 519


>05_03_0557 - 15441039-15442730
          Length = 563

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 569 ARHNFVWEQLYFPLPVRLVDASGGL 495
           ARH + WE L+  L V ++D +GGL
Sbjct: 353 ARHGYFWEALFTFLYVDILDTTGGL 377


>11_06_0364 -
           22727978-22729149,22730475-22730727,22731628-22731963,
           22732306-22732512,22734988-22735686,22736441-22736590,
           22740204-22740962,22741023-22741235
          Length = 1262

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
 Frame = -1

Query: 331 NNPGQLKI-----KPGEESQMFVDIGVYGVPKAK-GFETIASTRHVESFVIQNQGFQMLY 170
           NN G L++       G+  +  +   VY  P+ K  FE +A  + +  F + ++ FQ L 
Sbjct: 168 NNDGDLQVISIWETEGDHGESSIIRNVYDDPEIKRNFECLAWIKIMHPFDL-SEFFQALR 226

Query: 169 ADTYTTREEFRQMFDHKLYDRVRASL 92
           +  YT   + RQ  + KL+ + R  +
Sbjct: 227 SQFYTNSGQQRQGAEVKLFTKFRTEV 252


>11_06_0361 -
           22711200-22712180,22712523-22712729,22715205-22715903,
           22717848-22717979,22720422-22721180,22721241-22721453
          Length = 996

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
 Frame = -1

Query: 331 NNPGQLKI-----KPGEESQMFVDIGVYGVPKAK-GFETIASTRHVESFVIQNQGFQMLY 170
           NN G L++       G+  +  +   VY  P+ K  FE +A  + +  F + ++ FQ L 
Sbjct: 168 NNDGDLQVISIWETEGDHGESSIIRNVYDDPEIKRNFECLAWIKIMHPFDL-SEFFQALR 226

Query: 169 ADTYTTREEFRQMFDHKLYDRVRASL 92
           +  YT   + RQ  + KL+ + R  +
Sbjct: 227 SQFYTNSGQQRQGAEVKLFTKFRTEV 252


>04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534,
            31587535-31588097,31588250-31589913,31589956-31590066,
            31590152-31591181,31591234-31591406,31591535-31591814,
            31592275-31592331
          Length = 1434

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -1

Query: 583  LFWELQDIISFGNNFIFRYLFGWL----MPPEVSLLKLTQPEAVTKLYNKAHVIQDMLIP 416
            +FW L +++S   N        WL     P    L ++  P ++T+LYNK   I   ++P
Sbjct: 1369 IFWHLPNLLSLPANLASLTSLKWLHIGDCPRITRLPEMGLPLSLTQLYNKHTWILQTMVP 1428


>02_02_0139 +
           7122880-7122979,7123328-7123560,7123961-7124032,
           7124257-7124334,7124529-7124579,7124654-7124703,
           7124807-7124915,7125023-7125223
          Length = 297

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = -3

Query: 491 IEVDAARSRHQVVQQGSRDTRHANTN*ALGESDCVLSRRIRGIPYMVVSFQNIQQPWTAE 312
           ++V A R  HQV+   S D     T   L     +    I    +M V  + + QP+  E
Sbjct: 189 LDVVAFRHAHQVLFDKS-DILFICTLKPLSSDISIDESEIEAARWMPVE-EFVSQPFHQE 246

Query: 311 DKTWRGITDVC 279
           D+  R ITD+C
Sbjct: 247 DEMSRAITDIC 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,935,744
Number of Sequences: 37544
Number of extensions: 442335
Number of successful extensions: 1022
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)