Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_D16
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 200 1e-52
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 200 1e-52
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 143 1e-35
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 96 3e-21
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 44 2e-05
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 5.0
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 25 6.6
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 6.6
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 8.7
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 25 8.7
SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 8.7
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 200 bits (487), Expect = 1e-52
Identities = 91/138 (65%), Positives = 105/138 (76%)
Frame = -2
Query: 509 DAIHRGGGQIIPTXRRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 330
DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF
Sbjct: 696 DAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVF 755
Query: 329 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKP 150
E Q GTP++ +KAYLPVNESFGFT +LR T GQAFPQ VFDHW + GDP +P SKP
Sbjct: 756 SEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKP 815
Query: 149 YNVVQETRKRKGLKEGLP 96
+V E RKRKGLKE +P
Sbjct: 816 GQIVCEARKRKGLKENVP 833
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 200 bits (487), Expect = 1e-52
Identities = 91/138 (65%), Positives = 105/138 (76%)
Frame = -2
Query: 509 DAIHRGGGQIIPTXRRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 330
DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF
Sbjct: 696 DAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVF 755
Query: 329 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKP 150
E Q GTP++ +KAYLPVNESFGFT +LR T GQAFPQ VFDHW + GDP +P SKP
Sbjct: 756 SEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKP 815
Query: 149 YNVVQETRKRKGLKEGLP 96
+V E RKRKGLKE +P
Sbjct: 816 GQIVCEARKRKGLKENVP 833
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 143 bits (347), Expect = 1e-35
Identities = 65/120 (54%), Positives = 85/120 (70%)
Frame = -2
Query: 509 DAIHRGGGQIIPTXRRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 330
+ I+RGGGQIIPT RR Y+ LTA PRLMEPVY+ E+ P ++ IY +L RRRGHV
Sbjct: 812 EQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVL 871
Query: 329 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKP 150
++ G+P+++V+A +PV +S GF DLR +T GQA Q VFDHWQV+PGDP + KP
Sbjct: 872 QDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKP 931
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 95.9 bits (228), Expect = 3e-21
Identities = 43/106 (40%), Positives = 64/106 (60%)
Frame = -2
Query: 488 GQIIPTXRRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAG 309
GQ+I + + L PRLM +Y C++Q +G +YGV+++RRG V +E G
Sbjct: 841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEG 900
Query: 308 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 171
TP FIVKA +PV ESFGF ++ T G A+PQ +F +++L +P
Sbjct: 901 TPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENP 946
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 43.6 bits (98), Expect = 2e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = -2
Query: 443 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNES 264
L A P ++EP+ I P GG+ G L++R+ + + F ++A +P+N
Sbjct: 668 LQANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSM 725
Query: 263 FGFTADLRSNTGGQ 222
F +++D+R+ T G+
Sbjct: 726 FSYSSDIRALTKGK 739
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 197 HWQVLPGDPCEPQSKPYNVVQETRKRK 117
H+Q L GDP + PY VQ RK
Sbjct: 78 HFQNLSGDPVSQMATPYPPVQIELMRK 104
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 256 LLPICVPTPADRPSRSAYSTIGRS 185
+LP+ + TPA P + YS G S
Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTS 132
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 6.6
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = -1
Query: 252 CRFAFQHRRTGL----PAVR-IRPLAGPPWRPVRTSEQALQRCTGNEKEERIEGR 103
CRF + H + L PA R + WRPV E + NE+++R + R
Sbjct: 42 CRFCWHHIKEDLNGRCPACRRLYTEENVQWRPVTAEEWKMDLHRKNERKKREKER 96
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 195 LAGPPWRPVRTSEQALQRCTGNEKEER 115
++G +RPV E+ LQ+ N +EER
Sbjct: 435 VSGKVFRPVEEMEKELQKIRENFEEER 461
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 368 IYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGF 255
++ LNR++ + F Q+ ++ A L V +FGF
Sbjct: 275 LFDHLNRKKTNNFNTHQILSQSDVVLNALLSVATAFGF 312
>SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 128
Score = 24.6 bits (51), Expect = 8.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 173 PCEPQSKPYNVVQETRKRKG 114
P P +P+NV Q +KR G
Sbjct: 88 PSLPDQEPWNVFQNAKKRDG 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,925
Number of Sequences: 5004
Number of extensions: 43439
Number of successful extensions: 95
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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