Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_D16
(510 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 258 1e-69
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 258 1e-69
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 140 7e-34
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 140 7e-34
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 71 6e-13
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 47 9e-06
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 35 0.030
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 29 2.6
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 28 4.5
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 258 bits (633), Expect = 1e-69
Identities = 117/138 (84%), Positives = 124/138 (89%)
Frame = -2
Query: 509 DAIHRGGGQIIPTXRRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 330
DAIHRGGGQIIPT RR YA LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVF
Sbjct: 706 DAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVF 765
Query: 329 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKP 150
EESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP E +KP
Sbjct: 766 EESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKP 825
Query: 149 YNVVQETRKRKGLKEGLP 96
+V +TRKRKGLKEG+P
Sbjct: 826 NQIVLDTRKRKGLKEGVP 843
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 258 bits (633), Expect = 1e-69
Identities = 117/138 (84%), Positives = 124/138 (89%)
Frame = -2
Query: 509 DAIHRGGGQIIPTXRRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 330
DAIHRGGGQIIPT RR YA LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVF
Sbjct: 706 DAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVF 765
Query: 329 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKP 150
EESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP E +KP
Sbjct: 766 EESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKP 825
Query: 149 YNVVQETRKRKGLKEGLP 96
+V +TRKRKGLKEG+P
Sbjct: 826 NQIVLDTRKRKGLKEGVP 843
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 140 bits (338), Expect = 7e-34
Identities = 68/147 (46%), Positives = 92/147 (62%), Gaps = 12/147 (8%)
Frame = -2
Query: 509 DAIHRGGGQIIPTXRRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 330
+ ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+ P V +Y VL +RRGHV
Sbjct: 803 EPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVT 862
Query: 329 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP---- 162
++ + G+PM+ + AY+PV +SFGF DLR +T GQAF F HWQ++PGDP +
Sbjct: 863 TDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVI 922
Query: 161 -----QSKPY---NVVQETRKRKGLKE 105
Q P+ + +TR+RKGL E
Sbjct: 923 KTLDVQPTPHLAREFMIKTRRRKGLSE 949
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 140 bits (338), Expect = 7e-34
Identities = 68/147 (46%), Positives = 92/147 (62%), Gaps = 12/147 (8%)
Frame = -2
Query: 509 DAIHRGGGQIIPTXRRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 330
+ ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+ P V +Y VL +RRGHV
Sbjct: 678 EPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVT 737
Query: 329 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP---- 162
++ + G+PM+ + AY+PV +SFGF DLR +T GQAF F HWQ++PGDP +
Sbjct: 738 TDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVI 797
Query: 161 -----QSKPY---NVVQETRKRKGLKE 105
Q P+ + +TR+RKGL E
Sbjct: 798 KTLDVQPTPHLAREFMIKTRRRKGLSE 824
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 70.5 bits (165), Expect = 6e-13
Identities = 37/107 (34%), Positives = 53/107 (49%)
Frame = -2
Query: 491 GGQIIPTXRRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVA 312
GGQ++ + A RL+ +Y C + A+G ++ VL++R+ V E
Sbjct: 732 GGQMMTAIKASCSAAAKKLALRLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINE 791
Query: 311 GTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 171
T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 792 ATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 838
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 46.8 bits (106), Expect = 9e-06
Identities = 24/55 (43%), Positives = 28/55 (50%)
Frame = -2
Query: 335 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 171
V E T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 35.1 bits (77), Expect = 0.030
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -2
Query: 425 LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTAD 246
L+EP+ E P G + L +R + G I +A P+++ FG+T++
Sbjct: 642 LLEPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSE 699
Query: 245 LRSNTGGQ 222
LRS T G+
Sbjct: 700 LRSLTEGK 707
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 180 REDLPMVEYALREGLSAGVGTQIGSKTERLID 275
+ED+ +EY + E ++ +GTQ+ KT +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 27.9 bits (59), Expect = 4.5
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Frame = -2
Query: 491 GGQIIPTX-----RRCLYACXLTAQPRLMEPVYLCEIQCP-EVAVGGIYGVLNRRRGHVF 330
GG+I P ++C+ + + L EPV +I+ + I L RRR H
Sbjct: 565 GGKINPALLSACAQKCVSEALSSGEMVLTEPVMEVQIEIRNDDPTQPILNELLRRRAHFE 624
Query: 329 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 225
T + + A LP++E+ + +R+ T G
Sbjct: 625 HSDATESTEIRRICAILPLSETENLSKTVRTLTSG 659
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,060,214
Number of Sequences: 27780
Number of extensions: 263412
Number of successful extensions: 671
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -