Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D14
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.1  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   3.6  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.3  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    26   6.3  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   6.3  

>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 431 DTNETKLKKSVSFADNSDTETLEI-LFKHSDVEPSQEMYCPEKGIRKPSDVYEMF 270
           D  + KL  S           L +  F+  DVE +  ++C E GI +PS+   +F
Sbjct: 86  DLEDIKLHSSFESKKREIDTALSLHFFRQGDVELAH-LFCKEAGIEEPSESLHVF 139


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = +3

Query: 219 NVFXFLQYRSSSNY*IWEHFIHITWFSNTFLRAIHLL 329
           ++  F++Y    NY  W+ F+ + + S   L+A++++
Sbjct: 697 SLIKFMRYEPWCNYTYWQTFVSLPYQSKDVLKALNVV 733


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 199 TSTKSSLMYLXFFSIEVAPIIKFGNISYT 285
           T TKSSL    F   E  P++KF  I YT
Sbjct: 62  TPTKSSLSIGNFPYKEFDPVLKFPGIHYT 90


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 332 LALHHCV*KESLKFPYHCYQQMKHSFLV 415
           +A+ HC+      FP H Y  MK +  +
Sbjct: 286 IAMIHCIGSNGYAFPIHLYLNMKKNIFL 313


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 371 TLEILFKHSDVEPSQEMYCPEKGIRKPSDVYEMFPN 264
           TLE +FK  +V P  + + PE   R   +   +FPN
Sbjct: 109 TLEQIFKQRNVLPILQRFNPELFNRSSDNETPLFPN 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,490
Number of Sequences: 5004
Number of extensions: 44992
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)