Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D14
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z83228-8|CAE17820.2|  358|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z46934-4|CAA87042.3|  519|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF025453-7|AAK31401.1|  253|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
 Frame = +3

Query: 165 KSFFXC--FKCI-FNFDKIFINVFXFLQYRSSSNY*IWEHFIHITWFSNTFLRAIHLLTW 335
           K  F C  F+ + F+    F+    F+QY  S  Y I E  +  T ++ + +  +HL+  
Sbjct: 290 KKMFLCHQFQSVCFSIFIYFMTFSFFVQYLPSYLYDIMEQSVEKTAWTVSLIIIVHLILK 349

Query: 336 LYIT-VFEKN 362
           ++I+ +FEKN
Sbjct: 350 IFISRIFEKN 359


>Z83228-8|CAE17820.2|  358|Caenorhabditis elegans Hypothetical
           protein F52F12.9 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -3

Query: 392 ADNSDTETLEILFKHSDVEPSQEMYCPEKGIRKPSDVYEMFPNL--IIGATSILKKXKYI 219
           A+N +T    ++    + EP  ++YCP   IR P    E   NL  +IG   +     YI
Sbjct: 236 AENGETSDAVLVDACHNTEPVDDIYCPVAPIRTP----EFLDNLSKVIGTKGMTTFNVYI 291

Query: 218 NEDFVE 201
            +  ++
Sbjct: 292 QKATID 297


>Z46934-4|CAA87042.3|  519|Caenorhabditis elegans Hypothetical
           protein ZK1320.4 protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -3

Query: 728 NNLISKVNIPGHNSKMELLQQVIEXQTELERKLIQLQ 618
           NN + K+N+   +S MELL+  IE QT   +++  LQ
Sbjct: 138 NNSLRKINVTVEDSAMELLRH-IEEQTSEGQQIDMLQ 173


>AF025453-7|AAK31401.1|  253|Caenorhabditis elegans Hypothetical
           protein C08F1.6 protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 604 IISLFCNWINLRSNSVCXSITCCNSSI-LELC 696
           I SL+C+W      +V  SI CC + I + +C
Sbjct: 102 IFSLYCSWARAIIEAVIISILCCLAYISINIC 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,501,802
Number of Sequences: 27780
Number of extensions: 245205
Number of successful extensions: 672
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)