Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D13
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...   103   2e-23
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    30   0.30 
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    29   0.69 
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    28   0.91 
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.8  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   4.9  
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    26   4.9  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   8.5  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score =  103 bits (248), Expect = 2e-23
 Identities = 54/129 (41%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
 Frame = -2

Query: 451 FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 272
           F RYVE GRV LV  G   GKL  +VD++D  RAL+D P S  PRQ IR   + LT   +
Sbjct: 4   FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63

Query: 271 KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNR 95
           K    A + +V K W    +  KW  S WA+KL  K+ R+Q+ D+DRF  +   + +R +
Sbjct: 64  KLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQ 123

Query: 94  ARTAVFKSL 68
              AV K+L
Sbjct: 124 VNVAVAKAL 132


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 445 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 359
           + ++PG+VAL+  G   GK V ++  IDQ
Sbjct: 3   KILKPGKVALITRGRFAGKKVVILQAIDQ 31


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 445 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 359
           + ++PG+VALV  G   GK V ++  +DQ
Sbjct: 3   KILKPGKVALVTRGRFAGKKVVILQNVDQ 31


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 137 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRF 235
           V+C  CAL  +R    P+ FCP  ++F+  P+F
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKF 538


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = -2

Query: 250 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTA 83
           + L  +A  + +  E+  E++  +KLA +EKR +  +    K    R+++ RA+ A
Sbjct: 703 SELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA 758


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 527  VLNTYWPSFYTRAAFXAEVTLPYRP 601
            V NTYW S+ +     A+  +PY P
Sbjct: 1145 VRNTYWTSYNSAYVQSADAMVPYYP 1169


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 433 PGRVALVADGPLKGKLVSVVDVIDQTRALVDGP--GSGVPRQQI 308
           PG V ++  G  +GK V V+  ++ T  +V GP   +GVP +++
Sbjct: 54  PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGPYKVNGVPIRRV 96


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 348 WLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLL 247
           ++ D AV Y  N+    NS++ ++A N  S PL+
Sbjct: 132 YMPDSAVAYNPNQDQFGNSVNVSAACNNVSAPLI 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,758
Number of Sequences: 5004
Number of extensions: 45257
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)